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Showing papers in "Physical Review E in 2019"
Journal Article•10.1103/PHYSREVE.99.032132•
Run-and-tumble particle in one-dimensional confining potentials: Steady-state, relaxation, and first-passage properties

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Abhishek Dhar1, Anupam Kundu1, Satya N. Majumdar2, Sanjib Sabhapandit3, Grégory Schehr2 •
Tata Institute of Fundamental Research1, Université Paris-Saclay2, Raman Research Institute3
01 Mar 2019-Physical Review E
TL;DR: The dynamics of a one-dimensional run-and-tumble particle subjected to confining potentials of the type V(x)=α|x|^{p), with p>0, are studied and the stationary probability density P(x) has a rich behavior in the (p,α) plane.
Abstract: We study the dynamics of a one-dimensional run and tumble particle subjected to confining potentials of the type $V(x) = \alpha \, |x|^p$, with $p>0$. The noise that drives the particle dynamics is telegraphic and alternates between $\pm 1$ values. We show that the stationary probability density $P(x)$ has a rich behavior in the $(p, \alpha)$-plane. For $p>1$, the distribution has a finite support in $[x_-,x_+]$ and there is a critical line $\alpha_c(p)$ that separates an active-like phase for $\alpha > \alpha_c(p)$ where $P(x)$ diverges at $x_\pm$, from a passive-like phase for $\alpha \alpha_c$, it again is a delta function $P(x) = \delta(x)$. For the special cases $p=2$ and $p=1$, we obtain exactly the full time-dependent distribution $P(x,t)$, that allows us to study how the system relaxes to its stationary state. In addition, in these two cases, we also study analytically the full distribution of the first-passage time to the origin. Numerical simulations are in complete agreement with our analytical predictions.

209 citations

Journal Article•10.1103/PHYSREVE.100.032305•
Quantifying high-order interdependencies via multivariate extensions of the mutual information

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Fernando Rosas1, Pedro A. M. Mediano1, Michael Gastpar2, Henrik Jeldtoft Jensen1, Henrik Jeldtoft Jensen3 •
Imperial College London1, École Polytechnique Fédérale de Lausanne2, Tokyo Institute of Technology3
13 Sep 2019-Physical Review E
TL;DR: A model-agnostic approach to study statistical synergy, a form of emergence in which patterns at large scales are not traceable from lower scales, and introduces the O-information as a metric that is capable of characterizing synergy- and redundancy-dominated systems.
Abstract: This paper introduces a model-agnostic approach to study statistical synergy, a form of emergence in which patterns at large scales are not traceable from lower scales. Our framework leverages various multivariate extensions of Shannon's mutual information, and introduces the O-information as a metric that is capable of characterizing synergy- and redundancy-dominated systems. The O-information is a symmetric quantity, and can assess intrinsic properties of a system without dividing its parts into ``predictors'' and ``targets.'' We develop key analytical properties of the O-information, and study how it relates to other metrics of high-order interactions from the statistical mechanics and neuroscience literature. Finally, as a proof of concept, we present an exploration on the relevance of statistical synergy in Baroque music scores.

183 citations

Journal Article•10.1103/PHYSREVE.99.042139•
Eigenstate thermalization hypothesis and out of time order correlators.

[...]

Laura Foini1, Jorge Kurchan1•
École Normale Supérieure1
24 Apr 2019-Physical Review E
TL;DR: The eigenstate thermalization hypothesis (ETH) implies a form for the matrix elements of local operators between eigenstates of the Hamiltonian, expected to be valid for chaotic systems.
Abstract: The eigenstate thermalization hypothesis (ETH) implies a form for the matrix elements of local operators between eigenstates of the Hamiltonian, expected to be valid for chaotic systems. Another signal of chaos is a positive Lyapunov exponent, defined on the basis of Loschmidt echo or out of time order correlators. For this exponent to be positive, correlations between matrix elements unrelated by symmetry, usually neglected, have to exist. The same is true for the peak of the dynamic heterogeneity length χ_{4}, relevant for systems with slow dynamics. These correlations, as well as those between elements of different operators, are encompassed in a generalized form of ETH.

165 citations

Journal Article•10.1103/PHYSREVE.99.032123•
First passage under stochastic resetting in an interval.

[...]

Arnab Pal1, V. V. Prasad2•
Tel Aviv University1, Weizmann Institute of Science2
01 Mar 2019-Physical Review E
TL;DR: In this article, the authors consider a Brownian particle diffusing in a one-dimensional interval with absorbing end points and study the ramifications when such motion is interrupted and restarted from the same initial configuration.
Abstract: We consider a Brownian particle diffusing in a one-dimensional interval with absorbing end points. We study the ramifications when such motion is interrupted and restarted from the same initial configuration. We provide a comprehensive study of the first-passage properties of this trapping phenomena. We compute the mean first-passage time and derive the criterion on which restart always expedites the underlying completion. We show how this set-up is a manifestation of a success-failure problem. We obtain the success and failure rates and relate them with the splitting probabilities, namely the probability that the particle will eventually be trapped on either of the boundaries without hitting the other one. Numerical studies are presented to support our analytic results.

164 citations

Journal Article•10.1103/PHYSREVE.99.013304•
Performance of hybrid quantum-classical variational heuristics for combinatorial optimization.

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Giacomo Nannicini1•
IBM1
14 Jan 2019-Physical Review E
TL;DR: This study empirically verify that finding the ground state is harder for Hamiltonians with many Pauli terms, and that classical global optimization methods are more successful than local methods due to their ability of avoiding the numerous local optima.
Abstract: The recent literature on near-term applications for quantum computers contains several examples of the applications of hybrid quantum-classical variational approaches. This methodology can be applied to a variety of optimization problems, but its practical performance is not well studied yet. This paper moves some steps in the direction of characterizing the practical performance of the methodology, in the context of finding solutions to classical combinatorial optimization problems. Our study is based on numerical results obtained applying several classical nonlinear optimization algorithms to Hamiltonians for six combinatorial optimization problems; the experiments are conducted via noise-free classical simulation of the quantum circuits implemented in Qiskit. We empirically verify that: (1) finding the ground state is harder for Hamiltonians with many Pauli terms; (2) classical global optimization methods are more successful than local methods due to their ability of avoiding the numerous local optima; (3) there does not seem to be a clear advantage in introducing entanglement in the variational form.

163 citations

Journal Article•10.1103/PHYSREVE.99.042105•
Role of coherence in the nonequilibrium thermodynamics of quantum systems.

[...]

Gianluca Francica1, John Goold2, Francesco Plastina1•
University of Calabria1, Trinity College, Dublin2
04 Apr 2019-Physical Review E
TL;DR: It is proved that a division of the irreversible work can be made into a coherent and incoherent part, which provides an operational criterion for quantifying the coherent contribution in a generic nonequilibrium transformation on a closed quantum system.
Abstract: Exploiting the relative entropy of coherence, we isolate the coherent contribution in the energetics of a driven nonequilibrium quantum system. We prove that a division of the irreversible work can be made into a coherent and incoherent part. This provides an operational criterion for quantifying the coherent contribution in a generic nonequilibrium transformation on a closed quantum system. We then study such a contribution in two physical models of a driven qubit and kicked rotor. In addition, we also show that coherence generation is connected to the nonadiabaticity of a processes, for which it gives the dominant contribution for slow-enough transformations. The amount of generated coherence in the energy eigenbasis is equivalent to the change in diagonal entropy, and here we show that it fulfills a fluctuation theorem.

153 citations

Journal Article•10.1103/PHYSREVE.99.051301•
Application of atomic stress to compute heat flux via molecular dynamics for systems with many-body interactions.

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Donatas Surblys1, Hiroki Matsubara1, Gota Kikugawa1, Taku Ohara1•
Tohoku University1
14 May 2019-Physical Review E
TL;DR: It is demonstrated that the atomic stress approximation, while adequate for obtaining pressure, produces erroneous results in the case of heat flux when applied to systems with many-body interactions, such as angle, torsion, or improper potentials.
Abstract: Although the computation of heat flux and thermal conductivity either via Fourier's law or the Green-Kubo relation has become a common task in molecular dynamics simulation, contributions of three-body and larger many-body interactions have always proved problematic to compute. In recent years, due to the success when applying to pressure tensor computation, atomic stress approximation has been widely used to calculate heat flux, where the lammps molecular dynamics package is the most prominent propagator. We demonstrated that the atomic stress approximation, while adequate for obtaining pressure, produces erroneous results in the case of heat flux when applied to systems with many-body interactions, such as angle, torsion, or improper potentials. This also produces incorrect thermal conductivity values. To remedy this deficiency, by starting from a strict formulation of heat flux with many-body interactions, we reworked the atomic stress definition which resulted in only a simple modification. We modified the lammps package accordingly to demonstrate that the new atomic stress approximation produces excellent results close to that of a rigid formulation.

152 citations

Journal Article•10.1103/PHYSREVE.99.012304•
Master stability functions for complete, intralayer, and interlayer synchronization in multiplex networks of coupled Rössler oscillators.

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Longkun Tang1, Xiaoqun Wu2, Xiaoqun Wu3, Jinhu Lu4, Jun-an Lu2, Raissa M. D'Souza3 •
Huaqiao University1, Wuhan University2, University of California, Davis3, Beihang University4
01 Jan 2019-Physical Review E
TL;DR: It is shown how the master stability function, a celebrated framework for analyzing synchronization on a single network, can be extended to certain classes of multiplex networks with different intralayer and interlayer coupling functions.
Abstract: Synchronization phenomena are of broad interest across disciplines and increasingly of interest in a multiplex network setting. For the multiplex network of coupled Rossler oscillators, here we show how the master stability function, a celebrated framework for analyzing synchronization on a single network, can be extended to certain classes of multiplex networks with different intralayer and interlayer coupling functions. We derive three master stability equations that determine, respectively, the necessary regions of complete synchronization, intralayer synchronization, and interlayer synchronization. We calculate these three regions explicitly for the case of a two-layer network of Rossler oscillators and show that the overlap of the regions determines the type of synchronization achieved. In particular, if the interlayer or intralayer coupling function is such that the interlayer or intralayer synchronization region is empty, complete synchronization cannot be achieved regardless of the coupling strength. Furthermore, for any network structure, the occurrence of intralayer and interlayer synchronization depends mainly on the coupling functions of nodes within a layer and across layers, respectively. Our mathematical analysis requires that the intralayer and interlayer supra-Laplacians commute. But, we show this is only a sufficient, and not necessary, condition and that the results can be applied more generally.

144 citations

Journal Article•10.1103/PHYSREVE.100.033311•
Toward an artificial intelligence physicist for unsupervised learning

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Tailin Wu1, Max Tegmark1•
Massachusetts Institute of Technology1
19 Sep 2019-Physical Review E
TL;DR: In this paper, the authors propose a generalized mean loss to encourage each theory to specialize in its comparatively advantageous domain, and a differentiable description length objective to downweight bad data and "snap" learned theories into simple symbolic formulas.
Abstract: We investigate opportunities and challenges for improving unsupervised machine learning using four common strategies with a long history in physics: divide and conquer, Occam's razor, unification, and lifelong learning. Instead of using one model to learn everything, we propose a paradigm centered around the learning and manipulation of theories, which parsimoniously predict both aspects of the future (from past observations) and the domain in which these predictions are accurate. Specifically, we propose a generalized mean loss to encourage each theory to specialize in its comparatively advantageous domain, and a differentiable description length objective to downweight bad data and "snap" learned theories into simple symbolic formulas. Theories are stored in a "theory hub," which continuously unifies learned theories and can propose theories when encountering new environments. We test our implementation, the toy "artificial intelligence physicist" learning agent, on a suite of increasingly complex physics environments. From unsupervised observation of trajectories through worlds involving random combinations of gravity, electromagnetism, harmonic motion, and elastic bounces, our agent typically learns faster and produces mean-squared prediction errors about a billion times smaller than a standard feedforward neural net of comparable complexity, typically recovering integer and rational theory parameters exactly. Our agent successfully identifies domains with different laws of motion also for a nonlinear chaotic double pendulum in a piecewise constant force field.

142 citations

Journal Article•10.1103/PHYSREVE.99.032142•
Machine learning of phase transitions in the percolation and XY models.

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Wanzhou Zhang1, Wanzhou Zhang2, Jiayu Liu1, Tzu-Chieh Wei2•
Taiyuan University of Technology1, Stony Brook University2
29 Mar 2019-Physical Review E
TL;DR: It is found that using just one hidden layer in a fully connected neural network, the percolation transition can be learned and the data collapse by using the average output layer gives correct estimate of the critical exponent ν.
Abstract: In this paper, we apply machine learning methods to study phase transitions in certain statistical mechanical models on the two-dimensional lattices, whose transitions involve nonlocal or topological properties, including site and bond percolations, the XY model, and the generalized XY model. We find that using just one hidden layer in a fully connected neural network, the percolation transition can be learned and the data collapse by using the average output layer gives correct estimate of the critical exponent ν. We also study the Berezinskii-Kosterlitz-Thouless transition, which involves binding and unbinding of topological defects, vortices and antivortices, in the classical XY model. The generalized XY model contains richer phases, such as the nematic phase, the paramagnetic and the quasi-long-range ferromagnetic phases, and we also apply machine learning method to it. We obtain a consistent phase diagram from the network trained with only data along the temperature axis at two particular parameter Δ values, where Δ is the relative weight of pure XY coupling. Aside from using the spin configurations (either angles or spin components) as the input information in a convolutional neural network, we devise a feature engineering approach using the histograms of the spin orientations in order to train the network to learn the three phases in the generalized XY model and demonstrate that it indeed works. The trained network by using system size L×L can be used to the phase diagram for other sizes (L^{'}×L^{'}, where L^{'}≠L) without any further training.

138 citations

Journal Article•10.1103/PHYSREVE.100.032107•
Stable adiabatic quantum batteries.

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Alan C. Santos1, Barış Çakmak2, Steve Campbell3, Nikolaj Thomas Zinner4•
Federal Fluminense University1, Bahçeşehir University2, Trinity College, Dublin3, Aarhus University4
04 Sep 2019-Physical Review E
TL;DR: In this article, the authors exploit an adiabatic protocol to ensure a stable charged state of a three-level quantum battery which allows one to avoid the spontaneous discharging regime.
Abstract: With the advent of quantum technologies comes the requirement of building quantum components able to store energy to be used whenever necessary, i.e., quantum batteries. In this paper we exploit an adiabatic protocol to ensure a stable charged state of a three-level quantum battery which allows one to avoid the spontaneous discharging regime. We study the effects of the most relevant sources of noise on the charging process, and, as an experimental proposal, we discuss superconducting transmon qubits. In addition we study the self-discharging of our quantum battery where it is shown that spectrum engineering can be used to delay such phenomena.
Journal Article•10.1103/PHYSREVE.99.012120•
Non-Markovianity and negative entropy production rates.

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Philipp Strasberg1, Massimiliano Esposito1•
University of Luxembourg1
14 Jan 2019-Physical Review E
TL;DR: In this paper, the authors provide a consistent theoretical framework to study the finite-time thermodynamics of a large class of dynamics with a precise link to its non-Markovianity.
Abstract: Entropy production plays a fundamental role in nonequilibrium thermodynamics to quantify the irreversibility of open systems. Its positivity can be ensured for a wide class of setups, but the entropy production rate can become negative sometimes. This is often taken as an indicator of non-Markovianity. We make this link precise by showing under which conditions a negative entropy production rate implies non-Markovianity and when it does not. For a system coupled to a single heat bath, this can be established within a unified language for two setups: (i) the dynamics resulting from a coarse-grained description of a Markovian master equation and (ii) the classical Hamiltonian dynamics of a system coupled to a bath. The quantum version of the latter result is shown not to hold despite the fact that the integrated thermodynamic description is formally equivalent to the classical case. The instantaneous fixed point of a non-Markovian dynamics plays an important role in our study. Our key contribution is to provide a consistent theoretical framework to study the finite-time thermodynamics of a large class of dynamics with a precise link to its non-Markovianity.
Journal Article•10.1103/PHYSREVE.99.052106•
Powerful harmonic charging in a quantum battery.

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Yu-Yu Zhang1, Yu-Yu Zhang2, Tian-Ran Yang1, Libin Fu2, Xiaoguang Wang3 •
Chongqing University1, China Academy of Engineering Physics2, Zhejiang University3
08 May 2019-Physical Review E
TL;DR: A harmonic charging field is considered as an energy charger for the quantum battery, which consists of an ensemble of two-level atoms and it is found that the degenerate states play a negative role in the charging due to the gapless energies.
Abstract: We consider a harmonic charging field as an energy charger for the quantum battery, which consists of an ensemble of two-level atoms. The charging of noninteracting atoms is completely fulfilled, which exhibits a substantial improvement over previous static charging fields. Involving the repulsive interactions of atoms, the fully charging is achieved with shorter charged period over the noninteracting case, yielding an advantage for the charging. Excluding the charging field, a quantum phase transition is induced by the attractive atom-atom interactions, and the interacting atoms become degenerate in the ground state. We find that the degenerate states play a negative role in the charging due to the gapless energies. The atoms with strong attractive interactions can not be charged completely, which is accompanied by a drop of the maximum stored energy.
Journal Article•10.1103/PHYSREVE.99.063105•
Minimal surfaces in porous media: Pore-scale imaging of multiphase flow in an altered-wettability Bentheimer sandstone.

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Qingyang Lin1, Branko Bijeljic1, Steffen Berg2, Ronny Pini1, Martin J. Blunt1, Samuel Krevor1 •
Imperial College London1, Royal Dutch Shell2
10 Jun 2019-Physical Review E
TL;DR: High-resolution x-ray imaging was used in combination with differential pressure measurements to measure relative permeability and capillary pressure simultaneously during a steady-state waterflood experiment on a sample of Bentheimer sandstone, finding that the oil-brine interfaces were not flat, but had two approximately equal, but opposite, curvatures in orthogonal directions.
Abstract: We observed features of pore scale fluid distributions during oil-brine displacement in a mixed-wet sandstone rock sample. High-resolution X-ray imaging was used in combination with differential pressure measurements to measure relative permeability and capillary pressure simultaneously during a steady-state waterflood experiment on a sample of Bentheimer sandstone 51.6 mm long and 6.1 mm in diameter. After prolonged contact with crude oil to alter the surface wettability, a refined oil and formation brine were injected through the sample at a fixed total flow rate but in a sequence of increasing brine fractional flows. When the pressure across the system stabilized, X-ray tomographic images were taken. The images were used to compute saturation, interfacial area, curvature and contact angle. From this information relative permeability and capillary pressure were determined as functions of saturation. We compare our results with a previously published experiment with strongly water-wet conditions. The oil relative permeability was lower than in the water-wet case, although a smaller residual oil saturation, of approximately 0.11, was obtained, since the oil remained connected in layers in the altered wettability rock. The capillary pressure was slightly negative and ten times smaller in magnitude than a similar water-wet rock, and approximately constant over a wide range of intermediate saturation. The oil-brine interfacial area was also largely constant in this saturation range. The measured static contact angles had an average of $80^{\circ}$ with a standard deviation of $17^{\circ}$. We observed that the oil-brine interfaces were not flat, as may be expected for a very low mean curvature, but had two approximately equal, but opposite, curvatures in orthogonal directions. These interfaces were approximately minimal surfaces which allow efficient displacement and imply well-connected phases. Saddle-shaped menisci swept through the pore space at a constant capillary pressure and with an almost fixed area, removing most of the oil.
Journal Article•10.1103/PHYSREVE.99.042203•
Synchronization of chaotic systems and their machine-learning models.

[...]

Tongfeng Weng1, Huijie Yang1, Changgui Gu1, Jie Zhang2, Michael Small3, Michael Small4 •
University of Shanghai for Science and Technology1, Fudan University2, University of Western Australia3, Commonwealth Scientific and Industrial Research Organisation4
05 Apr 2019-Physical Review E
TL;DR: This work finds that a well-trained reservoir computer can synchronize with its learned chaotic systems by linking them with a common signal and shows that by sending just a scalar signal, one can achieve synchronism in trained reservoir computers and a cascading synchronization among chaotic systems and their fitted reservoir computers.
Abstract: Recent advances have demonstrated the effectiveness of a machine-learning approach known as "reservoir computing" for model-free prediction of chaotic systems. We find that a well-trained reservoir computer can synchronize with its learned chaotic systems by linking them with a common signal. A necessary condition for achieving this synchronization is the negative values of the sub-Lyapunov exponents. Remarkably, we show that by sending just a scalar signal, one can achieve synchronism in trained reservoir computers and a cascading synchronization among chaotic systems and their fitted reservoir computers. Moreover, we demonstrate that this synchronization is maintained even in the presence of a parameter mismatch. Our findings possibly provide a path for accurate production of all expected signals in unknown chaotic systems using just one observational measure.
Journal Article•10.1103/PHYSREVE.100.033305•
Comprehensive comparison of collision models in the lattice Boltzmann framework: Theoretical investigations.

[...]

Christophe Coreixas1, Bastien Chopard1, Jonas Latt1•
University of Geneva1
10 Sep 2019-Physical Review E
TL;DR: A formalism is proposed that describes all these methods within a common mathematical framework, and in this way allows us to draw direct links between them, and emphasizes the importance of an accurate representation of the equilibrium state, independently of the choice of moment space.
Abstract: Over the last decades, several types of collision models have been proposed to extend the validity domain of the lattice Boltzmann method (LBM), each of them being introduced in its own formalism. This article proposes a formalism that describes all these methods within a common mathematical framework, and in this way allows us to draw direct links between them. Here, the focus is put on single and multirelaxation time collision models in either their raw moment, central moment, cumulant, or regularized form. In parallel with that, several bases (nonorthogonal, orthogonal, Hermite) are considered for the polynomial expansion of populations. General relationships between moments are first derived to understand how moment spaces are related to each other. In addition, a review of collision models further sheds light on collision models that can be rewritten in a linear matrix form. More quantitative mathematical studies are then carried out by comparing explicit expressions for the post-collision populations. Thanks to this, it is possible to deduce the impact of both the polynomial basis (raw, Hermite, central, central Hermite, cumulant) and the inclusion of regularization steps on isothermal LBMs. Extensive results are provided for the D1Q3, D2Q9, and D3Q27 lattices, the latter being further extended to the D3Q19 velocity discretization. Links with the most common two and multirelaxation time collision models are also provided for the sake of completeness. This work ends by emphasizing the importance of an accurate representation of the equilibrium state, independently of the choice of moment space. As an addition to the theoretical purpose of this article, general instructions are provided to help the reader with the implementation of the most complicated collision models.
Journal Article•10.1103/PHYSREVE.100.023307•
Fermion sign problem in path integral Monte Carlo simulations: Quantum dots, ultracold atoms, and warm dense matter.

[...]

Tobias Dornheim
22 Aug 2019-Physical Review E
TL;DR: This paper presents a hands-on discussion of the FSP and investigates in detail its manifestation with respect to temperature, system size, interaction-strength and -type, and the dimensionality of the system.
Abstract: The ab initio thermodynamic simulation of correlated Fermi systems is of central importance for many applications, such as warm dense matter, electrons in quantum dots, and ultracold atoms. Unfortunately, path integral Monte Carlo (PIMC) simulations of fermions are severely restricted by the notorious fermion sign problem (FSP). In this paper, we present a hands-on discussion of the FSP and investigate in detail its manifestation with respect to temperature, system size, interaction-strength and -type, and the dimensionality of the system. Moreover, we analyze the probability distribution of fermionic expectation values, which can be non-Gaussian and fat-tailed when the FSP is severe. As a practical application, we consider electrons and dipolar atoms in a harmonic confinement, and the uniform electron gas in the warm dense matter regime. In addition, we provide extensive PIMC data, which can be used as a reference for the development of new methods and as a benchmark for approximations.
Journal Article•10.1103/PHYSREVE.99.012320•
Balance in signed networks.

[...]

Alec Kirkley1, George T. Cantwell1, Mark Newman1•
University of Michigan1
22 Jan 2019-Physical Review E
TL;DR: In a series of cross-validation tests, two measures of balance in signed networks based on the established notions of weak and strong balance are found to be able to predict signs substantially better than chance.
Abstract: We consider signed networks in which connections or edges can be either positive (friendship, trust, alliance) or negative (dislike, distrust, conflict). Early literature in graph theory theorized that such networks should display "structural balance," meaning that certain configurations of positive and negative edges are favored and others are disfavored. Here we propose two measures of balance in signed networks based on the established notions of weak and strong balance, and we compare their performance on a range of tasks with each other and with previously proposed measures. In particular, we ask whether real-world signed networks are significantly balanced by these measures compared to an appropriate null model, finding that indeed they are, by all the measures studied. We also test our ability to predict unknown signs in otherwise known networks by maximizing balance. In a series of cross-validation tests we find that our measures are able to predict signs substantially better than chance.
Journal Article•10.1103/PHYSREVE.100.032410•
Classification of diffusion modes in single-particle tracking data: Feature-based versus deep-learning approach.

[...]

Patrycja Kowalek1, Hanna Loch-Olszewska1, Janusz Szwabiński1•
Wrocław University of Technology1
20 Sep 2019-Physical Review E
TL;DR: A deep-learning method known as a convolutional neural network (CNN) is adopted to classify modes of diffusion from given trajectories and it is shown that CNN is usually slightly better than the feature-based methods, but at the cost of much longer processing times.
Abstract: Single-particle trajectories measured in microscopy experiments contain important information about dynamic processes occurring in a range of materials including living cells and tissues. However, extracting that information is not a trivial task due to the stochastic nature of the particles' movement and the sampling noise. In this paper, we adopt a deep-learning method known as a convolutional neural network (CNN) to classify modes of diffusion from given trajectories. We compare this fully automated approach working with raw data to classical machine learning techniques that require data preprocessing and extraction of human-engineered features from the trajectories to feed classifiers like random forest or gradient boosting. All methods are tested using simulated trajectories for which the underlying physical model is known. From the results it follows that CNN is usually slightly better than the feature-based methods, but at the cost of much longer processing times. Moreover, there are still some borderline cases in which the classical methods perform better than CNN.
Journal Article•10.1103/PHYSREVE.100.042201•
Gauging classical and quantum integrability through out-of-time-ordered correlators.

[...]

Emiliano M. Fortes1, Ignacio García-Mata2, Rodolfo A. Jalabert3, Diego Ariel Wisniacki1•
University of Buenos Aires1, Facultad de Ciencias Exactas y Naturales2, University of Strasbourg3
01 Oct 2019-Physical Review E
TL;DR: It is shown that studying the long-time regime of the OTOCs it is possible to detect and gauge the transition between integrability and chaos, and the proposed OTOC indicators have a very high accuracy that allow us to detect subtle features along the Integrability-to-chaos transition.
Abstract: Out-of-time-ordered correlators (OTOCs) have been proposed as a probe of chaos in quantum mechanics, on the basis of their short-time exponential growth found in some particular setups. However, it has been seen that this behavior is not universal. Therefore, we query other quantum chaos manifestations arising from the OTOCs, and we thus study their long-time behavior in systems of completely different nature: quantum maps, which are the simplest chaotic one-body system, and spin chains, which are many-body systems without a classical limit. It is shown that studying the long-time regime of the OTOCs it is possible to detect and gauge the transition between integrability and chaos, and we benchmark the transition with other indicators of quantum chaos based on the spectra and the eigenstates of the systems considered. For systems with a classical analog, we show that the proposed OTOC indicators have a very high accuracy that allow us to detect subtle features along the integrability-to-chaos transition.
Journal Article•10.1103/PHYSREVE.99.022130•
First passage of a particle in a potential under stochastic resetting: A vanishing transition of optimal resetting rate.

[...]

Saeed Ahmad1, Indrani Nayak1, Ajay Bansal1, Amitabha Nandi1, Dibyendu Das1 •
Indian Institute of Technology Bombay1
20 Feb 2019-Physical Review E
TL;DR: In this article, the authors studied the interplay between stochastic resetting and external confining potentials in the first passage of a stochastically constrained one-dimensional trapping potential and showed that the optimal resetting rate vanishes with a deviation from the critical strength of the potential as a power law.
Abstract: First passage in a stochastic process may be influenced by the presence of an external confining potential, as well as "stochastic resetting" in which the process is repeatedly reset back to its initial position. Here, we study the interplay between these two strategies, for a diffusing particle in a one-dimensional trapping potential V(x), being randomly reset at a constant rate r. Stochastic resetting has been of great interest as it is known to provide an "optimal rate" (r_{*}) at which the mean first passage time is a minimum. On the other hand, an attractive potential also assists in the first capture process. Interestingly, we find that for a sufficiently strong external potential, the advantageous optimal resetting rate vanishes (i.e., r_{*}→0). We derive a condition for this optimal resetting rate vanishing transition, which is continuous. We study this problem for various functional forms of V(x), some analytically, and the rest numerically. We find that the optimal rate r_{*} vanishes with a deviation from the critical strength of the potential as a power law with an exponent β which appears to be universal.
Journal Article•10.1103/PHYSREVE.99.012121•
Telegraphic processes with stochastic resetting.

[...]

Jaume Masoliver1•
University of Barcelona1
01 Jan 2019-Physical Review E
TL;DR: It is shown that in telegraphic processes, where signal propagation is not instantaneous, random resettings also stabilize the random walk around the resetting position and optimize the mean first-arrival time.
Abstract: We investigate the effects of resetting mechanisms on random processes that follow the telegrapher's equation instead of the usual diffusion equation. We thus study the consequences of a finite speed of signal propagation, the landmark of telegraphic processes. Likewise diffusion processes where signal propagation is instantaneous, we show that in telegraphic processes, where signal propagation is not instantaneous, random resettings also stabilize the random walk around the resetting position and optimize the mean first-arrival time. We also obtain the exact evolution equations for the probability density of the combined process and study the limiting cases.
Journal Article•10.1103/PHYSREVE.100.012120•
Scaled Brownian motion with renewal resetting.

[...]

Anna S. Bodrova1, Anna S. Bodrova2, Anna S. Bodrova3, Aleksei V. Chechkin4, Aleksei V. Chechkin5, Igor M. Sokolov3 •
Moscow State University1, National Research University – Higher School of Economics2, Humboldt State University3, University of Potsdam4, Kharkov Institute of Physics and Technology5
15 Jul 2019-Physical Review E
TL;DR: The situation in which the memory on the value of the diffusion coefficient at a resetting time is erased, so that the whole process is a fully renewal one and the dependence of the efficiency of search on the parameters of the process is considered.
Abstract: We investigate an intermittent stochastic process in which the diffusive motion with time-dependent diffusion coefficient $D(t)\ensuremath{\sim}{t}^{\ensuremath{\alpha}\ensuremath{-}1}$ with $\ensuremath{\alpha}g0$ (scaled Brownian motion) is stochastically reset to its initial position, and starts anew. In the present work we discuss the situation in which the memory on the value of the diffusion coefficient at a resetting time is erased, so that the whole process is a fully renewal one. The situation when the resetting of the coordinate does not affect the diffusion coefficient's time dependence is considered in the other work of this series [A. S. Bodrova et al., Phys. Rev. E 100, 012119 (2019)]. We show that the properties of the probability densities in such processes (erasing or retaining the memory on the diffusion coefficient) are vastly different. In addition we discuss the first-passage properties of the scaled Brownian motion with renewal resetting and consider the dependence of the efficiency of search on the parameters of the process.
Journal Article•10.1103/PHYSREVE.99.032108•
Spin quantum heat engines with shortcuts to adiabaticity.

[...]

Barış Çakmak1, Barış Çakmak2, Özgür E. Müstecaplıoğlu2•
Bahçeşehir University1, Koç University2
01 Mar 2019-Physical Review E
TL;DR: In this article, the authors considered a finite-time quantum Otto cycle with single and two spin-1/2 systems as its working medium and employed a shortcut-to-adiabaticity technique and evaluated the performance of the engine including the cost of the shortcut.
Abstract: We consider a finite-time quantum Otto cycle with single- and two spin-1/2 systems as its working medium. To mimic adiabatic dynamics at a finite time, we employ a shortcut-to-adiabaticity technique and evaluate the performance of the engine including the cost of the shortcut. We compare our results with the true adiabatic and nonadiabatic performances of the same cycle. Our findings indicate that the use of the shortcut-to-adiabaticity scheme significantly enhances the performance of the quantum Otto engine as compared to its adiabatic and nonadiabatic counterparts for different figures of merit.
Journal Article•10.1103/PHYSREVE.100.012111•
Binary optimization by momentum annealing.

[...]

Takuya Okuyama1, Tomohiro Sonobe2, Ken-ichi Kawarabayashi2, Masanao Yamaoka1•
Hitachi1, National Institute of Informatics2
01 Jul 2019-Physical Review E
TL;DR: An algorithm called momentum annealing (MA) is proposed, which, unlike SA, updates all spins of fully connected Ising models simultaneously and can be implemented on GPUs that are widely used for scientific computing.
Abstract: One of the vital roles of computing is to solve large-scale combinatorial optimization problems in a short time. In recent years, methods have been proposed that map optimization problems to ones of searching for the ground state of an Ising model by using a stochastic process. Simulated annealing (SA) is a representative algorithm. However, it is inherently difficult to perform a parallel search. Here we propose an algorithm called momentum annealing (MA), which, unlike SA, updates all spins of fully connected Ising models simultaneously and can be implemented on GPUs that are widely used for scientific computing. MA running in parallel on GPUs is 250 times faster than SA running on a modern CPU at solving problems involving 100 000 spin Ising models.
Journal Article•10.1103/PHYSREVE.100.052219•
Rogue waves on the double-periodic background in the focusing nonlinear Schrödinger equation

[...]

Jinbing Chen1, Dmitry E. Pelinovsky2, Rob White2•
Southeast University1, McMaster University2
27 Nov 2019-Physical Review E
TL;DR: The double-periodic solutions of the focusing nonlinear Schrödinger equation are constructed by using an algebraic method with two eigenvalues and the Lax spectrum is characterized and rogue waves arising on the background of such solutions are analyzed.
Abstract: The double-periodic solutions of the focusing nonlinear Schr\"odinger equation have been previously obtained by the method of separation of variables. We construct these solutions by using an algebraic method with two eigenvalues. Furthermore, we characterize the Lax spectrum for the double-periodic solutions and analyze rogue waves arising on the background of such solutions. Magnification of the rogue waves is studied numerically.
Journal Article•10.1103/PHYSREVE.100.022314•
Persistent homology of complex networks for dynamic state detection

[...]

Audun Myers1, Elizabeth Munch1, Firas A. Khasawneh1•
Michigan State University1
21 Aug 2019-Physical Review E
TL;DR: It is shown how persistent homology, a tool from TDA, can be used to yield a compressed, multi-scale representation of the graph that can distinguish between dynamic states such as periodic and chaotic behavior.
Abstract: In this paper we develop an alternative topological data analysis (TDA) approach for studying graph representations of time series of dynamical systems. Specifically, we show how persistent homology, a tool from TDA, can be used to yield a compressed, multi-scale representation of the graph that can distinguish between dynamic states such as periodic and chaotic behavior. We show the approach for two graph constructions obtained from the time series. In the first approach the time series is embedded into a point cloud which is then used to construct an undirected k-nearest-neighbor graph. The second construct relies on the recently developed ordinal partition framework. In either case, a pairwise distance matrix is then calculated using the shortest path between the graph's nodes, and this matrix is utilized to define a filtration of a simplicial complex that enables tracking the changes in homology classes over the course of the filtration. These changes are summarized in a persistence diagram's two-dimensional summary of changes in the topological features. We then extract existing as well as new geometric and entropy point summaries from the persistence diagram and compare to other commonly used network characteristics. Our results show that persistence-based point summaries yield a clearer distinction of the dynamic behavior and are more robust to noise than existing graph-based scores, especially when combined with ordinal graphs.
Journal Article•10.1103/PHYSREVE.99.032111•
Renyi entropy of chaotic eigenstates.

[...]

Tsung-Cheng Lu1, Tarun Grover1•
University of California, San Diego1
01 Mar 2019-Physical Review E
TL;DR: In this paper, an analytical expression for Renyi entanglement entropies was derived for chaotic many-body Hamiltonians, which is a universal function of the density of states and is valid even when the subsystem is a finite fraction of the total system.
Abstract: Using arguments built on ergodicity, we derive an analytical expression for the Renyi entanglement entropies which, we conjecture, applies to the finite-energy density eigenstates of chaotic many-body Hamiltonians. The expression is a universal function of the density of states and is valid even when the subsystem is a finite fraction of the total system-a regime in which the reduced density matrix is not thermal. We find that in the thermodynamic limit, only the von Neumann entropy density is independent of the subsystem to the total system ratio V_{A}/V, while the Renyi entropy densities depend nonlinearly on V_{A}/V. Surprisingly, Renyi entropies S_{n} for n>1 are convex functions of the subsystem size, with a volume law coefficient that depends on V_{A}/V, and exceeds that of a thermal mixed state at the same energy density. We provide two different arguments to support our results: the first one relies on a many-body version of Berry's formula for chaotic quantum-mechanical systems, and is closely related to the eigenstate thermalization hypothesis. The second argument relies on the assumption that for a fixed energy in a subsystem, all states in its complement allowed by the energy conservation are equally likely. We perform an exact diagonalization study on quantum spin-chain Hamiltonians to test our analytical predictions.
Journal Article•10.1103/PHYSREVE.100.032136•
Symmetric exclusion process under stochastic resetting.

[...]

Urna Basu1, Anupam Kundu2, Arnab Pal3•
Raman Research Institute1, Tata Institute of Fundamental Research2, Tel Aviv University3
23 Sep 2019-Physical Review E
TL;DR: In this paper, the authors studied the behavior of a symmetric exclusion process in the presence of stochastic resetting where the configuration of the system is reset to a steplike profile with a fixed rate.
Abstract: We study the behavior of a symmetric exclusion process (SEP) in the presence of stochastic resetting where the configuration of the system is reset to a steplike profile with a fixed rate $r.$ We show that the presence of resetting affects both the stationary and dynamical properties of SEPs strongly. We compute the exact time-dependent density profile and show that the stationary state is characterized by a nontrivial inhomogeneous profile in contrast to the flat one for $r=0.$ We also show that for $rg0$ the average diffusive current grows linearly with time $t,$ in stark contrast to the $\sqrt{t}$ growth for $r=0.$ In addition to the underlying diffusive current, we identify the resetting current in the system which emerges due to the sudden relocation of the particles to the steplike configuration and is strongly correlated to the diffusive current. We show that the average resetting current is negative, but its magnitude also grows linearly with time $t.$ We also compute the probability distributions of the diffusive current, resetting current, and total current (sum of the diffusive and the resetting currents) using the renewal approach. We demonstrate that while the typical fluctuations of both the diffusive and reset currents around the mean are typically Gaussian, the distribution of the total current shows a strong non-Gaussian behavior.
Journal Article•10.1103/PHYSREVE.100.012119•
Nonrenewal resetting of scaled Brownian motion.

[...]

Anna S. Bodrova1, Anna S. Bodrova2, Anna S. Bodrova3, Aleksei V. Chechkin4, Aleksei V. Chechkin5, Igor M. Sokolov3 •
Moscow State University1, National Research University – Higher School of Economics2, Humboldt State University3, University of Potsdam4, Kharkov Institute of Physics and Technology5
01 Jul 2019-Physical Review E
TL;DR: In this paper, Bodrova et al. investigated an intermittent stochastic process in which diffusive motion with a time-dependent diffusion coefficient, D(t)∼t^{α-1}, α>0 (scaled Brownian motion), is stochastically reset to its initial position and starts anew.
Abstract: We investigate an intermittent stochastic process in which diffusive motion with a time-dependent diffusion coefficient, D(t)∼t^{α-1}, α>0 (scaled Brownian motion), is stochastically reset to its initial position and starts anew. The resetting follows a renewal process with either an exponential or a power-law distribution of the waiting times between successive renewals. The resetting events, however, do not affect the time dependence of the diffusion coefficient, so that the whole process appears to be a nonrenewal one. We discuss the mean squared displacement of a particle and the probability density function of its positions in this process. We show that scaled Brownian motion with resetting demonstrates rich behavior whose properties essentially depend on the interplay of the parameters of the resetting process and the particle's displacement infree motion. The motion of particles can remain almost unaffected by resetting but can also get slowed down or even be completely suppressed. Especially interesting are the nonstationary situations in which the mean squared displacement stagnates but the distribution of positions does not tend to any steady state. This behavior is compared to the situation [discussed in the companion paper; A. S. Bodrova et al., Phys. Rev. E 100, 012120 (2019)10.1103/PhysRevE.100.012120] in which the memory of the value of the diffusion coefficient at a resetting time is erased, so that the whole process is a fully renewal one. We show that the properties of the probability densities in such processes (erasing or retaining the memory on the diffusion coefficient) are vastly different.
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