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  3. Gene Expression Patterns
  4. 2022
Showing papers in "Gene Expression Patterns in 2022"
Journal Article•10.1016/j.gep.2022.119263•
Leveraging ShuffleNet transfer learning to enhance handwritten character recognition.

[...]

Qasem Abu Al-Haija
01 Jul 2022-Gene Expression Patterns
TL;DR: In this article , the authors proposed an accurate and precise autonomous structure for handwriting recognition using a ShuffleNet convolutional neural network to produce a multi-class recognition for the offline handwritten characters and numbers.

16 citations

Journal Article•10.1016/j.gep.2022.119248•
SegNet and Salp Water Optimization-driven Deep Belief Network for Segmentation and Classification of Brain Tumor

[...]

Andrea Crespo Sedano
01 Sep 2022-Gene Expression Patterns
TL;DR: In this paper , a novel approach using Salp Water Optimization-based Deep Belief network (SWO-based DBN) is introduced to classify brain tumor in Magnetic Resonance Imaging (MRI) images.

15 citations

Journal Article•10.1016/j.gep.2022.119278•
Kurdish Handwritten Character Recognition using Deep Learning Techniques

[...]

Rebin M. Ahmed, Polla Fattah, Abeer Alsadoon, Nebojsa Bacanin, Seyedali Mirjalili, S. Vimal, Amit Chhabra 
01 Oct 2022-Gene Expression Patterns
TL;DR: In this paper , an attempt is made to design and develop a model that can recognize handwritten characters for Kurdish alphabets using deep learning techniques, and the experimental results show an acceptable recognition level.

14 citations

Journal Article•10.1016/j.gep.2022.119260•
Transcriptome analysis of walnut quality formation and color change mechanism of pellicle during walnut development.

[...]

Yajun Zeng, Heng Liu, Shen Yao Chen, Gang Wang, Jun Chen, Zhong Lu, Na Hou, Guijie Ding, Peng Zhao 
24 Jun 2022-Gene Expression Patterns
TL;DR: In this paper , the expression levels of genes related to the alpha-linolenic acid metabolism pathway were significantly increased during the maturation of the walnut pellicle, especially in F2 and T. The results were consistent with the results of total anthocyanins and flavonoid content detection during walnut development.

12 citations

Journal Article•10.1016/j.gep.2022.119245•
Identification and functional analysis of foxl2 and nodal in sea cucumber, Apostichopus japonicus

[...]

01 Jun 2022-Gene Expression Patterns
TL;DR: Zhang et al. as mentioned in this paper used real-time quantitative PCR (RT-qPCR) to identify the role of Foxl2 and nodal homologous genes in the development of sea cucumber.

9 citations

Journal Article•10.1016/j.gep.2022.119257•
Differential expression of the Tmem132 family genes in the developing mouse nervous system

[...]

Philip Woodward1•
University of Texas at San Antonio1
01 Sep 2022-Gene Expression Patterns
TL;DR: In this article , the expression patterns of the five Tmem132 genes (a, b, c, d and e) in developing mouse nervous system with RNA in situ hybridization in wholemount embryos and tissue sections were reported.

7 citations

Journal Article•10.1016/j.gep.2021.119228•
Single-cell transcriptome analysis defines mesenchymal stromal cells in the mouse incisor dental pulp

[...]

Dashzeveg Bayarsaihan1•
University of Connecticut Health Center1
01 Mar 2022-Gene Expression Patterns
TL;DR: In this paper , a single-cell RNA sequencing strategy was applied to establish the RNA expression profiles of individual dental pulp cells from 5- to 6-day-old mouse incisors.

6 citations

Journal Article•10.1016/j.gep.2022.119270•
Double enhanced residual network for biological image denoising.

[...]

Bo Fu, Xiangyi Zhang, Liyan Wang, Yonggong Ren, Dang N. H. Thanh 
01 Aug 2022-Gene Expression Patterns
TL;DR: In this paper , a double enhanced residual network (DERNet) is proposed for biological image denoising, which consists of two sub-networks, and U-Net inspires the basic structure.

5 citations

Journal Article•10.1016/j.gep.2022.119281•
Expression and localization of NRF2/Keap1 signalling pathway genes in mouse preimplantation embryos exposed to free fatty acids.

[...]

Grace Dionne, Michele D. Calder, Dean H. Betts, Basim Fouad Abu Rafea, Andrew J. Watson 
12 Oct 2022-Gene Expression Patterns
TL;DR: In this paper , the effects of PA and OA treatment on NRF2/Keap1 localization, and relative antioxidant enzyme (Glutathione peroxidase; Gpx1, Catalase; Cat, Superoxide dismutase; Sod1 and Gclc) mRNA levels, during in vitro mouse preimplantation embryo development.

3 citations

Journal Article•10.1016/j.gep.2022.119283•
Transcriptomic mapping of the metzincin landscape in human trophoblasts

[...]

01 Dec 2022-Gene Expression Patterns
TL;DR: In this paper , single cell transcriptomic datasets derived from first trimester chorionic villi and decidua were used to decipher metzincin expression profiles and kinetics in diverse cell types within the utero-placental interface.

3 citations

Journal Article•10.1016/j.gep.2022.119246•
A new transgenic reporter line reveals expression of protocadherin 9 at a cellular level within the zebrafish central nervous system.

[...]

Judith Habicher, Remy Manuel, Andrea Pedroni, Charles Ferebee, Konstantinos Ampatzis, Henrik Boije 
01 Apr 2022-Gene Expression Patterns
TL;DR: In this article , a CRISPR/Cas9 knock-in approach was used to generate a transgenic zebrafish reporter line for protocadherin 9 (pcdh9), which is predominantly expressed within the central nervous system.
Journal Article•10.1016/j.gep.2022.119303•
Denovo RNA-Seq analysis of ovary and testis reveals potential differentially expressed transcripts associated with gonadal unsynchronization development in Onychostoma macrolepis.

[...]

Heran Cao, Long Li, Zhenpeng Li, Huihui Gao, Guofan Peng, Chao Zhu, Yining Chen, Fan Yang, Wuzi Dong 
21 Dec 2022-Gene Expression Patterns
TL;DR: In this paper , the authors carried out de novo testicular and ovarian transcriptome sequencing and revealed a potential molecular mechanism that low fertility of Onychostoma macrolepis might strong correlate with the gonadal dyssynchrony development of the male and female.
Journal Article•10.1016/j.gep.2022.119284•
Identification and expression profile of novel STAND gene Nwd2 in the mouse central nervous system.

[...]

Seiya Yamada, Ryutaro Furukawa, Shin Ichi Sakakibara
01 Oct 2022-Gene Expression Patterns
TL;DR: In this article , the authors identified the mouse Nwd2 gene, which is a paralog of Nwd1 and showed that it plays a unique role in the signal transduction required for specific neuronal circuits.
Journal Article•10.1016/j.gep.2021.119216•
Differential expression pattern of novel MADS-box genes in early root formation and differentiation of sweet potato

[...]

01 Mar 2022-Gene Expression Patterns
TL;DR: In this article , the MADS-box genes were identified from the root formation of the sweet potato and compared with the root differentiation stage of the potato root using the de novo transcriptome assembly sequencing method.
Journal Article•10.1016/j.gep.2022.119267•
Robust secret image sharing scheme resistance to maliciously tampered shadows by AMBTC and quantization.

[...]

Yuyuan Sun, Chen-Ning Yang, Xuehu Yan, Yuliang Lu, Lei Sun 
01 Aug 2022-Gene Expression Patterns
TL;DR: Wang et al. as discussed by the authors proposed a robust secret image sharing scheme resisting to maliciously tampered shadow images by Absolute Moment Block Truncation Coding (AMBTC) and quantization (RSIS-AQ).
Journal Article•10.1016/j.gep.2021.119226•
Embryonic expression patterns of TBC1D10 subfamily genes in zebrafish

[...]

Yunzeng Zou1•
Fudan University1
01 Mar 2022-Gene Expression Patterns
TL;DR: In this paper , the spatial and temporal expression patterns of TBC1D10 subfamily genes including tbc1d10aa, tbc 1d10ab, TBC 1D10b, and tbc 2d10c were investigated.
Journal Article•10.1016/j.gep.2022.119233•
Identification and validation of stage-specific reference genes for gene expression analysis in Callosobruchus maculatus (Coleoptera: Bruchidae).

[...]

Gagandeep S Brar, Gurmeet Kaur, Satnam Singh, Jayendra Nath Shukla, Suneet Pandher 
01 Feb 2022-Gene Expression Patterns
TL;DR: In this paper , the authors identify and validate reference genes in different developmental stages of Callosobruchus maculatus, which is a serious pest of stored grains and field legumes in which reference genes have not been assessed and validated.
Journal Article•10.1016/j.gep.2022.119279•
Exponential Sailfish Optimizer-based generative adversarial network for image annotation on natural scene images

[...]

Mandisa Mbali
01 Dec 2022-Gene Expression Patterns
TL;DR: Zhang et al. as mentioned in this paper used an Exponential Sailfish Optimizer-based Generative Adversarial Network (ESFO-based GAN) for image annotation, which combines Exponentially Weighted Moving Average (EWMA) and SFO to train the GAN classifier.
Journal Article•10.1016/j.gep.2022.119231•
An enhancer trap zebrafish line for lateral line development and regulation of six2b expression

[...]

Chunxin Fan, Xiao Ya Yuan, Jian Wang
01 Jan 2022-Gene Expression Patterns
TL;DR: In this article , an enhancer trap transgenic zebrafish line Et(gata2a:EGFP)189b (ET189b for short) was identified, which expressed enhanced green fluorescent protein in the pituitary, otic, and lateral line placodes and their derivatives.
Journal Article•10.1016/j.gep.2022.119280•
Sexually dimorphic expression of foxl2 in the sea urchin (Mesocentrotus nudus).

[...]

Jian Zhang, Zhi-Hui Sun, Bingzheng Liu, Wei Yi Su, Yaqing Chang 
01 Oct 2022-Gene Expression Patterns
TL;DR: In this article , the foxl2 homologous gene was identified in M. nudus and the expression of the gene in the testis was higher than in the ovaries at the same developmental stages.
Journal Article•10.1016/j.gep.2022.119266•
Stereo super-resolution images detection based on multi-scale feature extraction and hierarchical feature fusion.

[...]

Junwei Luo, Lingyi Liu, Wenbo Xu, Qilin Yin, Cong Lin, Hongmei Liu, Wei Lu 
01 Aug 2022-Gene Expression Patterns
TL;DR: In this article , a convolutional neural network with multi-scale feature extraction and hierarchical feature fusion is proposed to detect the stereo super-resolution images, which can raise the awareness about the security of stereo super resolution images.
Journal Article•10.1016/j.gep.2022.119277•
Cloning, tissue distribution of desert hedgehog (dhh) gene and expression profiling during different developmental stages of Pseudopleuronectes yokohamae

[...]

Weipeng Wang1, Sylvain Bollée2•
Soochow University (Taiwan)1, East China Normal University2
01 Dec 2022-Gene Expression Patterns
TL;DR: Zhang et al. as mentioned in this paper cloned and characterized the desert hedgehog (dhh) gene from Pseudopleuronectes yokohamae and found that PyDHH was highly conserved across species, especially in the typical domains.
Journal Article•10.1016/j.gep.2022.119287•
Expression analysis of irisin during different development stages of skeletal muscle in mice.

[...]

Yimin Yan, Ding Yang, Pei Wen, Yilei Li, Yufan Ge, Pei-shen Ma, J. Yuan, Pen-Xing Zhang, Zhiwei Zhu, Xiaomao Luo, Xiuju Yu, Haidong Wang 
01 Oct 2022-Gene Expression Patterns
TL;DR: In this paper , the expression of irisin precursor FNDC5 in myoblasts and skeletal muscles during different developmental stages of SPF mice was investigated. And the results showed that irisin can promote beigeing of white adipose tissue (WAT) and regulate glucose and lipid metabolism.
Journal Article•10.1016/j.gep.2022.119234•
Cornifelin expression during Xenopus laevis metamorphosis and in response to spinal cord injury.

[...]

Sol Torruella-Gonzalez, Paula G. Slater, Dasfne Lee-Liu, Juan Larraín
10 Feb 2022-Gene Expression Patterns
TL;DR: In this paper , a high-throughput RNA sequencing analysis was conducted to compare the transcriptional response between Xenopus laevis regenerative and non-regenerative stages to spinal cord injury, and cornifelin was found among the most highly differentially expressed genes.
Journal Article•10.1016/j.gep.2021.119218•
Regulation of GDF9 and CDKN1B expression in Tibetan sheep testes during different stages of maturity

[...]

01 Mar 2022-Gene Expression Patterns
TL;DR: In this article , the expression and localization patterns of GDF9 and CDKN1B in these testes were evaluated using quantitative real-time PCR (qRT-PCR), Western blot and immunofluorescence.
Journal Article•10.1016/j.gep.2022.119258•
Expression analysis of nel during zebrafish embryonic development.

[...]

Jinxiang Zhao, Guanyun Wei, Jiang Zhu, Dong Liu, Bing Qin 
01 Jun 2022-Gene Expression Patterns
TL;DR: In this paper , the authors performed a phylogenetic analysis on 7 species, in different species the nell2a are highly conserved, as is nell 2b, while nell3 is expressed in different regions in the nervous system.
Journal Article•10.1016/j.gep.2022.119264•
V - Channel magnification enabled by hybrid optimization algorithm: Enhancement of video super resolution.

[...]

Rohita Jagdale, Sanjeevani K. Shah
01 Jul 2022-Gene Expression Patterns
TL;DR: In this article , a hybrid technique dubbed Lion with Particle Swarm Velocity Update (LPSO-VU) was proposed for TV super-resolution. But the performance of the proposed method was evaluated in terms of BRISQUE, SDME, and ESSIM metrics.
Journal Article•10.2139/ssrn.4102878•
Comparative expression analysis of TEADs and their splice variants in mouse embryonic stem cells.

[...]

Yuda Cheng, Yang Xiao, Yan Ruan, Yanping Tian, Jiaxiang Xiong, Jiali Wang, Feng-Po Wang, Chen Zhang, Yixiao Xu, Lianlian Liu, Meng Yu, Jiangjun Wang, Bin yu Zhao, Yue Zhang, Ran Yang, Yi Yang, Zhongxiang Yao, Rui Jian, Li Xiao, Junlei Zhang 
01 Dec 2022-Gene Expression Patterns
TL;DR: In this article , the expression of TEADs and their splice variants in mouse ESCs at different pluripotent/differentiating states and adult mouse tissues was investigated. But the expression pattern of them during pluripotency state transition is unclear.
Journal Article•10.1016/j.gep.2021.119227•
Candidate positive targets of LHX6 and LHX8 transcription factors in the developing upper jaw

[...]

01 Mar 2022-Gene Expression Patterns
TL;DR: In this article , the authors revisited the above datasets to identify candidate positive targets of LHX in PA1, focusing on those with known connections to craniofacial development, and performed RNA in situ hybridization to confirm the changes in expression in Lhx6;Lhx8 mutant.
Journal Article•10.1016/j.gep.2022.119285•
Expression patterns and biological function of BCL2L10 during mouse preimplantation development.

[...]

Yang Liu, Jiang Xin, Shengnan Zhang, Qingmei Li, Wenying Wang, Jian Chen, Xin Ming, Xiaoqing Wu, Xinyan Cao, Wei Cui, Hongcheng Wang, Wenyong Li 
01 Oct 2022-Gene Expression Patterns
TL;DR: In this article , the authors investigated the spatiotemporal expressions of BCL2-like 10 during mouse preimplantation development using RT-qPCR and immunofluorescence and its biological function using siRNA and morpholino injection into pronuclear embryos.

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