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  3. Gene Expression Patterns
  4. 2011
Showing papers in "Gene Expression Patterns in 2011"
Journal Article•10.1016/J.GEP.2011.03.002•
Evaluation of Sycp3, Plzf and Cyclin B3 expression and suitability as spermatogonia and spermatocyte markers in zebrafish.

[...]

Yuichi Ozaki1, Kenji Saito1, Minori Shinya1, Minori Shinya2, Toshihiro Kawasaki1, Noriyoshi Sakai2, Noriyoshi Sakai1 •
National Institute of Genetics1, Graduate University for Advanced Studies2
01 Jun 2011-Gene Expression Patterns
TL;DR: Specific antibodies were raised against Sycp3, Plzf and Cyclin B3 in zebrafish and then used to determine the localization of these proteins in the testis, showing that these molecules have properties that will enable their use as markers of spermatocytes and early sperMatogonia inZebrafish.

92 citations

Journal Article•10.1016/J.GEP.2011.01.003•
Identification of housekeeping genes suitable for gene expression analysis in the zebrafish.

[...]

Raffaella Casadei1, Maria Chiara Pelleri1, Lorenza Vitale1, Federica Facchin1, Luca Lenzi1, Silvia Canaider1, Pierluigi Strippoli1, Flavia Frabetti1 •
University of Bologna1
01 Mar 2011-Gene Expression Patterns
TL;DR: A systematic analysis to identify "optimal" HK genes in Danio rerio (zebrafish) to be used in expression analyses conducted on embryos/larvae at different developmental stages, as well as on differentiated adult tissues from single donors showed that beta-actin 2 (bactin2) is the mRNA with the lowest variability of expression.

89 citations

Journal Article•10.1016/J.GEP.2010.12.002•
Expression of clock proteins in developing tooth.

[...]

Li Zheng1, Silvana Papagerakis1, Santiago Schnell1, Willemijntje A. Hoogerwerf1, Petros Papagerakis1 •
University of Michigan1
01 Mar 2011-Gene Expression Patterns
TL;DR: The expression of four clock genes during tooth development is investigated, suggesting that clock genes might be involved in the regulation of ameloblast and odontoblast functions, such as enamel and dentin protein secretion and matrix mineralization.

68 citations

Journal Article•10.1016/J.GEP.2010.08.005•
Identification of adult midgut precursors in Drosophila.

[...]

Craig A. Micchelli1, Lisa Sudmeier1, Norbert Perrimon2, Shan Tang2, Ryan Beehler-Evans1 •
Washington University in St. Louis1, Howard Hughes Medical Institute2
01 Jan 2011-Gene Expression Patterns
TL;DR: Evidence is provided that the adult Drosophila midgut arises from a molecularly distinct population of single cells present by the embryonic/larval transition, and the identification of the Ecdysone receptor as a regulator of AMP expansion.

60 citations

Journal Article•10.1016/J.GEP.2010.10.008•
The neurexin superfamily of Caenorhabditis elegans.

[...]

Liat Haklai-Topper1, Jürgen Soutschek2, Helena Sabanay1, Jochen Scheel2, Oliver Hobert3, Elior Peles1 •
Weizmann Institute of Science1, University of Tübingen2, Columbia University Medical Center3
01 Jan 2011-Gene Expression Patterns
TL;DR: The domain organization and expression of the entire, core neurexin superfamily in the nematode Caenorhabditis elegans is described and it is found that nrx-1 is exclusively expressed in most if not all cells of the nervous system and localizes to presynaptic specializations.

56 citations

Journal Article•10.1016/J.GEP.2010.08.006•
The HMGB protein gene family in zebrafish: Evolution and embryonic expression patterns

[...]

Silvia Moleri1, Giuseppe Cappellano1, Germano Gaudenzi1, Solei Cermenati1, Franco Cotelli1, David S. Horner1, Monica Beltrame1 •
University of Milan1
01 Jan 2011-Gene Expression Patterns
TL;DR: The HMGB family in zebrafish is characterized and a detailed phylogenetic analysis of HMGB proteins is reported, highlighting substantial overlaps, but also subtle differences and specificities in the expression patterns of the zebra fish hmgb genes.

37 citations

Journal Article•10.1016/J.GEP.2010.10.005•
Unfolded Protein Response (UPR) is activated during normal lens development.

[...]

Zeynep Firtina1, Melinda K. Duncan1•
University of Delaware1
01 Jan 2011-Gene Expression Patterns
TL;DR: Evidence of Unfolded Protein Response (UPR) activation during normal lens development and differentiation in the mouse is found and a role for UPR activation in lens fiber cell differentiation during embryogenesis is proposed.

37 citations

Journal Article•10.1016/J.GEP.2010.08.008•
Expression of candidate markers for stem/progenitor cells in the inner ears of developing and adult GFAP and nestin promoter-GFP transgenic mice.

[...]

Ibtihel Smeti1, Etienne Savary1, Vincent Capelle1, Jean-Philippe Hugnot1, Alain Uziel1, Azel Zine1 •
University of Montpellier1
01 Jan 2011-Gene Expression Patterns
TL;DR: The findings suggest that the loss of regenerative capacity of the adult organ of Corti is related to down-regulation of stem/progenitor key-markers from the mature supporting cells.

34 citations

Journal Article•10.1016/J.GEP.2011.04.002•
Expression patterns of lgr4 and lgr6 during zebrafish development.

[...]

Kentaro Hirose1, Nobuyoshi Shimoda, Yutaka Kikuchi1•
Hiroshima University1
01 Oct 2011-Gene Expression Patterns
TL;DR: The cloned two zebrafish lgr genes are cloned and showed that these two genes are orthologs of mammalian Lgr4 and Lgr6, providing a basis for future studies aimed at analyzing the functions of zebra fish Lgr 4 and L gr6 in cell differentiation and proliferation during organ development.

29 citations

Journal Article•10.1016/J.GEP.2010.09.002•
Gene expression analysis of Six3, Pax6, and Otx in the early development of the stalked crinoid Metacrinus rotundus.

[...]

Akihito Omori1, Koji Akasaka1, Daisuke Kurokawa1, Shonan Amemiya2, Shonan Amemiya1 •
University of Tokyo1, Ochanomizu University2
01 Jan 2011-Gene Expression Patterns
TL;DR: The present results suggest that radical alterations have occurred in the expression and function of homeobox genes in basal echinoderms.

25 citations

Journal Article•10.1016/J.GEP.2011.05.001•
Expression of Crip2, a LIM-domain-only protein, in the mouse cardiovascular system under physiological and pathological conditions

[...]

Tzu Chieh Wei1, Hui Yu Lin1, Cheng Chieh Lu1, Chun Ming Chen1, Li Ru You1 •
National Yang-Ming University1
01 Oct 2011-Gene Expression Patterns
TL;DR: It is shown that Crip2 is highly expression in the myocardium, moderately expressed in the endocardium and absent from the epicardium of the developing mouse heart, implying that Crips2 might exert an important impact on the cardiovascular development, maintenance and homeostasis.
Journal Article•10.1016/J.GEP.2010.12.004•
Gene expression profile of Ci-VSP in juveniles and adult blood cells of ascidian.

[...]

Michio Ogasawara1, Mari Sasaki2, Noriko Nakazawa1, Atsuo Nishino3, Yasushi Okamura3, Yasushi Okamura2 •
Chiba University1, Osaka University2, National Institutes of Natural Sciences, Japan3
01 Mar 2011-Gene Expression Patterns
TL;DR: Findings suggest that in addition to its previously suggested roles in testis or sperm, Ci-VSP plays a key role in voltage-induced signal transduction in cells of the digestive system and blood.
Journal Article•10.1016/J.GEP.2010.12.006•
Amphioxus Tbx6/16 and Tbx20 embryonic expression patterns reveal ancestral functions in chordates

[...]

Mohamed R. Belgacem1, Marie-Line Escande1, Hector Escriva1, Stéphanie Bertrand1•
Centre national de la recherche scientifique1
01 Mar 2011-Gene Expression Patterns
TL;DR: Comparison with the expression patterns of the different vertebrate orthologues indicates a conserved role of those genes in posterior mesoderm formation in chordates.
Journal Article•10.1016/J.GEP.2010.09.003•
CRTC1 expression during normal and abnormal salivary gland development supports a precursor cell origin for mucoepidermoid cancer.

[...]

Tina Jaskoll1, Khine Htet1, George Abichaker1, Frederic J. Kaye2, Michael Melnick1 •
University of Southern California1, University of Florida2
01 Jan 2011-Gene Expression Patterns
TL;DR: The results indicate that CRTC1 protein is expressed in SMG epithelia during early stages of morphogenesis, disappears with differentiation, and reappears in initial tumor-like pathology, suggesting thatCRTC1 may play a role during embryonic SMG branching morphogenesis but not for pro-acinar/acinar differentiation, supporting a precursor cell origin for MEC tumorigenesis.
Journal Article•10.1016/J.GEP.2010.09.006•
Characterisation of the Drosophila procollagen lysyl hydroxylase, dPlod

[...]

Stephanie Bunt1, Barry Denholm1, Helen Skaer1•
University of Cambridge1
01 Jan 2011-Gene Expression Patterns
TL;DR: It is shown that dPlod is required for type-IV collagen secretion from haemocytes and fat body, and thus it is established that LH3 enzyme function is conserved across widely separated animal phyla.
Journal Article•10.1016/J.GEP.2011.01.004•
All four zebrafish Wnt7 genes are expressed during early brain development.

[...]

Carlo A. Beretta1, Irena Brinkmann1, Matthias Carl1•
Heidelberg University1
01 Mar 2011-Gene Expression Patterns
TL;DR: Wnt7 genes are mainly expressed in a number of CNS structures at developmental stages at which patterning and neural specification takes place, which suggests diverse as well as redundant involvements during brain development.
Journal Article•10.1016/J.GEP.2011.08.004•
Muscle type-specific expression of Zasp52 isoforms in Drosophila

[...]

Anja Katzemich1, Jenny Yanyan Long1, Klodiana Jani1, Byeo Ri Lee1, Frieder Schöck1 •
McGill University1
01 Dec 2011-Gene Expression Patterns
TL;DR: Stage- and tissue-specific expression in different muscle types for Zasp52 isoforms encoding different LIM domains are demonstrated, implying muscle-specific functions in Z-disk assembly or maintenance.
Journal Article•10.1016/J.GEP.2011.06.001•
Cloning and spatiotemporal expression of RIC-8 in Xenopus embryogenesis

[...]

R. Maldonado-Agurto1, G. Toro1, Jaime Fuentealba1, Cecilia Arriagada1, Tania Campos1, Miguel Albistur1, Juan Pablo Henríquez1, Juan Olate1, María Victoria Hinrichs1, Marcela Torrejón1 •
University of Concepción1
01 Oct 2011-Gene Expression Patterns
TL;DR: Cloned a ric-8 gene from Xenopus tropicalis (xtric-8) and determined its spatiotemporal expression pattern throughout embryogenesis suggest that RIC-8 functions are related to the development of the nervous system.
Journal Article•10.1016/J.GEP.2011.07.003•
Identification of a new cartilage-specific S100-like protein up-regulated during endo/perichondral mineralization in gilthead seabream

[...]

Vera G. Fonseca1, Joana Rosa1, Vincent Laizé1, Paulo J. Gavaia1, M. Leonor Cancela1 •
University of the Algarve1
01 Oct 2011-Gene Expression Patterns
TL;DR: Limitation of S100-like gene expression to chondrocytes of cartilaginous tissues undergoing endo/perichondral mineralization in juvenile fish further confirmed the mineralogenic role of the protein in fish and emphasized the potential of S 100-like as a marker of mineralizing cartilage in developing fish.
Journal Article•10.1016/J.GEP.2011.08.005•
Distinct expression patterns of dickkopf genes during late embryonic development of Danio rerio

[...]

Gerold Untergasser1, Agnieszka Martowicz1, Martin Hermann1, Sonja Töchterle, Dirk Meyer •
Innsbruck Medical University1
01 Dec 2011-Gene Expression Patterns
TL;DR: Both dkk3 genes display a unique and distinct expression pattern in late embryonic development, pointing to a specific role during neuronal and pancreatic cell differentiation.
Journal Article•10.1016/J.GEP.2011.03.004•
Messenger RNA and microRNA profiling during early mouse EB formation

[...]

Rashmi Tripathi1, Harpreet K Saini2, Roland Rad1, Cei Abreu-Goodger2, Stijn van Dongen2, Anton J. Enright2 •
Wellcome Trust Sanger Institute1, European Bioinformatics Institute2
01 Jun 2011-Gene Expression Patterns
TL;DR: How miRNA expression changes may affect the expression of mRNAs involved in EB formation on a genome-wide scale is depicted.
Journal Article•10.1016/J.GEP.2010.10.001•
Fgf9 signalling stimulates Spred and Sprouty expression in embryonic mouse pancreas mesenchyme.

[...]

Kathrine B. Sylvestersen, Pedro Luis Herrera1, Palle Serup, Claude Rescan•
University of Geneva1
01 Jan 2011-Gene Expression Patterns
TL;DR: Results suggest that Fgf signalling is active in the pancreatic mesenchyme, where expression of Spred1/2 and Spry2/4 appear downstream of F gf9 signalling.
Journal Article•10.1016/J.GEP.2010.10.003•
Analysis of the expression of retinoic acid metabolising genes during Xenopus laevis organogenesis.

[...]

Joshua Lynch1, James McEwan1, Caroline W. Beck1•
University of Otago1
01 Jan 2011-Gene Expression Patterns
TL;DR: Seven genes involved in metabolism, catabolism and binding of RA are described during organogenesis in the clawed frog Xenopus laevis, indicating regions of the embryo that could be affected by RA mediated patterning and identifies some differences with other vertebrates.
Journal Article•10.1016/J.GEP.2010.12.005•
XLMR candidate mouse gene, Zcchc12 (Sizn1) is a novel marker of Cajal-Retzius cells.

[...]

Ginam Cho1, Youngshin Lim2, Jeffrey A. Golden1•
Children's Hospital of Philadelphia1, University of Pennsylvania2
01 Mar 2011-Gene Expression Patterns
TL;DR: It is found that Sizn1 is primarily restricted to the ventral forebrain including the medial ganglionic eminence, the septum, amygdala, and striatum, and its expression is detected in the cortical hem and pallial-subpallial boundary (PSB; anti-hem); both sources of Cajal-Retzius cells.
Journal Article•10.1016/J.GEP.2010.12.003•
Tissue specific characterisation of Lim-kinase 1 expression during mouse embryogenesis.

[...]

Nils O. Lindström1, Carlos Neves1, Rebecca McIntosh1, Z. Miedzybrodzka1, Neil Vargesson1, J. Martin Collinson1 •
University of Aberdeen1
01 Mar 2011-Gene Expression Patterns
TL;DR: This detailed study of the spatial and temporal expression of LimK1 shows that LIMK1 expression is more dynamic than previously reported, in particular at sites of tissue-tissue interactions guiding multiple developmental processes.
Journal Article•10.1016/J.GEP.2011.09.002•
Molecular and functional analysis of Drosophila single-minded larval central brain expression.

[...]

Stephanie M. Freer1, Daniel C. Lau1, Joseph C. Pearson1, Kristin Benjamin Talsky1, Stephen T. Crews1 •
University of North Carolina at Chapel Hill1
01 Dec 2011-Gene Expression Patterns
TL;DR: It is demonstrated that postembryonic sim, instead, controls aspects of axon guidance in the brain and resembles the roles of vertebrate sim that have an early role in neuronal migration and a later role in axonogenesis.
Journal Article•10.1016/J.GEP.2010.09.001•
Alterations in the expression of the Atp7a gene in the early postnatal development of the mosaic mutant mice (Atp7a mo-ms) - An animal model for Menkes disease.

[...]

Małgorzata Lenartowicz1, Rafał R. Starzyński2, Krzysztof Wieczerzak1, Wojciech Krzeptowski1, Paweł Lipiński2, Józefa Styrna1 •
Jagiellonian University1, Polish Academy of Sciences2
01 Jan 2011-Gene Expression Patterns
TL;DR: It is speculated that disturbance in the expression of the Atp7a gene and, consequently, change in the copper concentration of the organs, may contribute to the early fatal outcome of mosaic males.
Journal Article•10.1016/J.GEP.2011.04.001•
Identification and developmental analysis of endothelin receptor type-A expressing cells in the mouse kidney.

[...]

Taro Kitazawa1, Takahiro Sato1, Koichi Nishiyama1, Rieko Asai1, Yuichiro Arima1, Yasunobu Uchijima1, Yukiko Kurihara1, Hiroki Kurihara1 •
University of Tokyo1
01 Oct 2011-Gene Expression Patterns
TL;DR: Results indicate that Ednra expression may be linked with non-epithelial fate determination and differentiation of metanephric mesenchyme and may serve as a useful tool in studies on renal function and pathophysiology of various renal diseases.
Journal Article•10.1016/J.GEP.2010.10.004•
Characterization of spatial and temporal expression pattern of Col15a1b during zebrafish development.

[...]

Sandrine Bretaud1, Aurélie Pagnon-Minot1, Emilie Guillon1, Florence Ruggiero1, Dominique Le Guellec1 •
University of Lyon1
01 Jan 2011-Gene Expression Patterns
TL;DR: In this article, a zebrafish ortholog of the human collagen XV gene, Col15a1a, was identified and its complete primary sequence was identified, showing that the overall structure of collagen XV is well conserved between vertebrates.
Journal Article•10.1016/J.GEP.2011.01.001•
Epiplakin1 is expressed in the cholangiocyte lineage cells in normal liver and adult progenitor cells in injured liver

[...]

Akira Matsuo1, Tetsu Yoshida1, Takanori Yasukawa1, Rika Miki1, Kazuhiko Kume1, Shoen Kume1 •
Kumamoto University1
01 Mar 2011-Gene Expression Patterns
TL;DR: Eppk1 serves as a useful marker for detecting the hepatic progenitor population in the developing and adult liver and the use of EppK1 as a marker will facilitate studies of mouse hepatic PROGenitor cells.

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