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  3. Gene Expression Patterns
  4. 2004
Showing papers in "Gene Expression Patterns in 2004"
Journal Article•10.1016/J.MODGEP.2004.03.009•
CTIP1 and CTIP2 are differentially expressed during mouse embryogenesis

[...]

Mark Leid1, Jane E. Ishmael1, Dorina Avram2, David M. Shepherd3, Valérie Fraulob4, Pascal Dollé4 •
Oregon State University1, Albany Medical College2, University of Montana3, French Institute of Health and Medical Research4
01 Oct 2004-Gene Expression Patterns
TL;DR: The results support the selective contributions of both CTIP1 and CTIP2 in the development and function of both the central nervous and immune systems and the importance of future investigations to define the function(s) of both proteins.

167 citations

Journal Article•10.1016/J.MODGEP.2004.03.002•
Identification of unique, differentiation stage-specific patterns of expression of the bromodomain-containing genes Brd2, Brd3, Brd4, and Brdt in the mouse testis

[...]

Enyuan Shang1, Glicella Salazar1, Thomas E. Crowley1, Xiang Wang1, Rocio A Lopez1, Xiangyuan Wang1, Debra J. Wolgemuth •
Columbia University Medical Center1
01 Sep 2004-Gene Expression Patterns
TL;DR: In situ hybridization and immunostaining on histological sections of mouse testes revealed a strikingly specific and dynamic change of cellular specificity in the germ line during the progression of spermatogenesis, suggesting that genes in this subclass are not simply redundant.

118 citations

Journal Article•10.1016/J.MODGEP.2004.01.016•
Duplicate zebrafish runx2 orthologues are expressed in developing skeletal elements.

[...]

Maria Vega Flores1, Vicky W. K. Tsang1, Wenjue Hu2, Maggie L. Kalev-Zylinska1, John H. Postlethwait3, Philip S. Crosier1, Kathryn E. Crosier1, Shannon Fisher2 •
University of Auckland1, Johns Hopkins University School of Medicine2, University of Oregon3
01 Sep 2004-Gene Expression Patterns
TL;DR: Two orthologues of the mammalian gene Runx2a and runx2b are identified, which share sequence homology and gene structure with the mammalian genes, and map to regions of the zebrafish genome displaying conserved synteny with the region where the human gene is localized.

104 citations

Journal Article•10.1016/J.MODGEP.2004.07.004•
Foxc2 is expressed in developing lymphatic vessels and other tissues associated with lymphedema-distichiasis syndrome.

[...]

Susan L. Dagenais1, Rebecca L. Hartsough1, Robert P. Erickson2, Marlys H. Witte2, Matthew G. Butler1, Thomas W. Glover1 •
University of Michigan1, University of Arizona2
01 Oct 2004-Gene Expression Patterns
TL;DR: It is found that Foxc2 is expressed in lymphatic primordia, jugular lymph sacs, lymphatic collectors and capillaries, as well as in podocytes, developing eyelids and other tissues associated with abnormalities in lymphedema-distichiasis syndrome.

104 citations

Journal Article•10.1016/J.MODGEP.2003.11.008•
Expression pattern of the repulsive guidance molecules RGM A, B and C during mouse development.

[...]

Judit Oldekamp1, Nadine Krämer2, Gonzalo Alvarez-Bolado1, Thomas Skutella2•
Max Planck Society1, Charité2
01 May 2004-Gene Expression Patterns
TL;DR: The mouse expression patterns of the three known members of the novel RGM gene family ('Repulsive Axonal Guidance molecules' A, B and C) are characterized by in situ hybridization for the first time.

96 citations

Journal Article•10.1016/J.MODGEP.2004.08.003•
Expression of Dlk/Pref-1 defines a subpopulation in the oval cell compartment of rat liver.

[...]

Naoki Tanimizu1, Tohru Tsujimura2, Kohro Takahide3, Tatsuhiko Kodama3, Koji Nakamura3, Koji Nakamura1, Atsushi Miyajima1, Atsushi Miyajima3 •
Teikyo University1, Hyogo College of Medicine2, University of Tokyo3
01 Dec 2004-Gene Expression Patterns
TL;DR: Examination of the expression of Dlk in oval cells in the rat 2-acetylaminofluorene/partial hepatectomy (2AAF/PH) model demonstrates thatDlk is expressed in a subpopulation of oval cells and that DlK(+) cells represent intermediate cells between Dllk(-) oval Cells and mature hepatocytes.

88 citations

Journal Article•10.1016/J.MODGEP.2004.04.012•
Expression of fascin-1, the gene encoding the actin-bundling protein fascin-1, during mouse embryogenesis.

[...]

Adèle De Arcangelis1, Elisabeth Georges-Labouesse1, Josephine C. Adams2•
French Institute of Health and Medical Research1, Cleveland Clinic2
01 Oct 2004-Gene Expression Patterns
TL;DR: Fascin-1 was widely expressed throughout the embryo and the developing nervous system and mesenchymal tissues represented major sites of expression.

84 citations

Journal Article•10.1016/J.MODGEP.2004.02.002•
Expression patterns of three estrogen receptor genes during zebrafish (Danio rerio) development: evidence for high expression in neuromasts

[...]

Angèle Tingaud-Sequeira1, Michèle André1, Jean Forgue1, Christophe Barthe1, Patrick J. Babin1 •
University of Bordeaux1
01 Sep 2004-Gene Expression Patterns
TL;DR: Analysis of expression patterns of three zebrafish ER genes during development using whole-mount in situ hybridization found that high levels of esr2a and esR2b of maternal origin are inherited and segregated to the blastomers, while slight labeling is observed for esr1 transcripts.

84 citations

Journal Article•10.1016/J.MODGEP.2004.03.003•
Overlapping and distinct expression domains of Zic2 and Zic3 during mouse gastrulation.

[...]

Paul Elms, Andrew Scurry, Jennifer Davies, Catherine Willoughby, Terry Hacker, Debora Bogani, Ruth M. Arkell 
01 Sep 2004-Gene Expression Patterns
TL;DR: It is shown that both of the Zic genes are expressed prior to and throughout gastrulation, and expression of Zic3 correlates well with the first steps in the establishment of the left-right axis.

81 citations

Journal Article•10.1016/J.MODGEP.2003.11.002•
Spatial and temporal expression of Wnt and Dickkopf genes during murine lens development.

[...]

S. Ang1, R.J.W. Stump1, Frank J. Lovicu1, John W. McAvoy1•
University of Sydney1
01 May 2004-Gene Expression Patterns
TL;DR: This study shows that multiple Wnt and Dkk genes are expressed during lens development, predominantly in the epithelial compartment but is also associated, particularly in the case of Wnt7b, with early events in fibre differentiation.

77 citations

Journal Article•10.1016/J.MODGEP.2004.04.005•
Expression of Fibroblast growth factor 19 (Fgf19) during chicken embryogenesis and eye development, compared with Fgf15 expression in the mouse.

[...]

Hitomi Kurose1, Takaaki Bito1, Taro Adachi1, Miyuki Shimizu1, Sumihare Noji1, Hideyo Ohuchi1 •
University of Tokushima1
01 Oct 2004-Gene Expression Patterns
TL;DR: The normal development of eyes relies on proper signaling through Fibroblast growth factor (FGF) receptors, but the source and identity of cognate ligands have remained largely unknown, and it is found that Fgf19 is expressed in the developing chicken retina.
Journal Article•10.1016/S1567-133X(03)00152-2•
Comparison of maf gene expression patterns during chick embryo development.

[...]

Laure Lecoin1, Karine Sii-Felice1, Celio Pouponnot1, Alain Eychène1, Marie-Paule Felder-Schmittbuhl1 •
Curie Institute1
01 Jan 2004-Gene Expression Patterns
TL;DR: A complete comparative analysis of maf gene expression patterns in vertebrates is presented and it is reported that the developing lens, kidney, pancreas and apoptotic zones of limb buds show sustained co-expression of large maf genes.
Journal Article•10.1016/J.MODGEP.2004.04.003•
Developmental expression of the Notch signaling pathway genes during mouse preimplantation development

[...]

Sarah Cormier1, Sandrine Vandormael-Pournin1, Charles Babinet1, Michel Cohen-Tannoudji1•
Pasteur Institute1
01 Oct 2004-Gene Expression Patterns
TL;DR: The results suggest that the Notch pathway may be active during mouse preimplantation development, particularly between the inner cell mass and the trophectoderm of the blastocyst.
Journal Article•10.1016/J.MODGEP.2004.05.001•
Using real time RT-PCR analysis to determine multiple gene expression patterns during XX and XY mouse fetal gonad development

[...]

Gerrit J. Bouma, Geoffrey T. Hart, Linda L. Washburn, Andrew K. Recknagel, Eva M. Eicher 
01 Nov 2004-Gene Expression Patterns
TL;DR: Real time PCR is an efficient and powerful tool for studying multiple gene expression patterns during gonad development and differentiation, and can provide insight into gene interactions.
Journal Article•10.1016/J.MODGEP.2004.01.011•
Cloning and embryonic expression of zebrafish neuropilin genes.

[...]

Hung-Hsiang Yu1, Corinne Houart2, Cecilia B. Moens1•
Fred Hutchinson Cancer Research Center1, King's College London2
01 Jul 2004-Gene Expression Patterns
TL;DR: The expression patterns of these four zebrafish neuropilin genes in wild type embryos from the beginning of somitogenesis to 48 h post-fertilization are characterized.
Journal Article•10.1016/J.MODGEP.2004.07.003•
Pathophysiology of syndromic combined pituitary hormone deficiency due to a LHX3 defect in light of LHX3 and LHX4 expression during early human development.

[...]

Marie-Laure Sobrier1, Tania Attié-Bitach2, Irene Netchine1, Férechté Encha-Razavi2, Michel Vekemans2, Serge Amselem1 •
French Institute of Health and Medical Research1, Necker-Enfants Malades Hospital2
01 Dec 2004-Gene Expression Patterns
TL;DR: Using in situ hybridization, it is shown that LHX3 and LHX4 are expressed in the developing human pituitary and along the rostro-caudal length of the spinal cord; here, both transcripts are detected in the ventral part giving rise to motorneurons and interneurONS.
Journal Article•10.1016/J.MODGEP.2004.03.001•
Lhx2 is expressed in the septum transversum mesenchyme that becomes an integral part of the liver and the formation of these cells is independent of functional Lhx2.

[...]

Åsa Kolterud1, Ewa Wandzioch1, Leif Carlsson1•
Umeå University1
01 Sep 2004-Gene Expression Patterns
TL;DR: Lhx2 is specifically expressed in the liver-associated septum transversum mesenchyme that subsequently becomes an integral part of the liver and the formation of these mesenchymal cells does not require functional LhX2.
Journal Article•10.1016/J.MODGEP.2003.11.003•
Analysis of the gene expression profile of mouse male meiotic germ cells

[...]

Pellegrino Rossi1, Susanna Dolci1, Claudio Sette1, Federica Capolunghi1, Manuela Pellegrini1, Maria Loiarro1, Silvia Di Agostino1, Maria Paola Paronetto1, Paola Grimaldi1, Daniele Merico2, Enzo Martegani2, Raffaele Geremia1 •
University of Rome Tor Vergata1, University of Milan2
01 May 2004-Gene Expression Patterns
TL;DR: The analysis confirmed the previously described pre-meiotic or meiotic expression for several genes, in particular for those involved in the regulation of the mitotic and meiotic cell cycle, and for those whose transcripts are accumulated during the meiotic stages to be translated later in post-meiotics stages.
Journal Article•10.1016/J.MODGEP.2003.09.012•
Identification and developmental expression pattern of van gogh-like 1, a second zebrafish strabismus homologue

[...]

Jason R. Jessen1, Lilianna Solnica-Krezel1•
Vanderbilt University1
01 May 2004-Gene Expression Patterns
TL;DR: The identification of zebrafish vangl1 is described and the first spatiotemporal expression and functional analysis of a vertebrate vang l1 homologue is provided, suggesting that Vangl 1 and Trilobite/Vangl2 have similar biochemical activities during embryogenesis.
Journal Article•10.1016/S1567-133X(03)00149-2•
Temporal and spatial expression of gonadotropin releasing hormone (GnRH) in the brain of developing zebrafish (Danio rerio).

[...]

Ashok Gopinath1, L Andrew Tseng1, Kathleen E. Whitlock1•
Cornell University1
01 Jan 2004-Gene Expression Patterns
TL;DR: These results provide the first developmental description of GnRH gene expression where cGnRH-II and sGn RH are initially expressed at the onset of the first day after fertilization.
Journal Article•10.1016/J.MODGEP.2003.09.004•
Embryonic expression patterns of the Drosophila dystrophin-associated glycoprotein complex orthologs.

[...]

Linda C. Dekkers1, Mariska C. van der Plas1, Pieter B. van Loenen1, Johan T. den Dunnen1, Gert-Jan B. van Ommen1, Lee G. Fradkin1, Jasprina N. Noordermeer1 •
Leiden University Medical Center1
01 Mar 2004-Gene Expression Patterns
TL;DR: The genome of the fruitfly Drosophila melanogaster encodes a single ortholog of the majority of the mammalian DGC protein subclasses, thus potentially simplifying their functional analysis and finding that they are predominantly expressed in the nervous system and in muscle.
Journal Article•10.1016/J.MODGEP.2003.08.004•
Nr0b1 and its network partners are expressed early in murine embryos prior to steroidogenic axis organogenesis.

[...]

Robert C. Clipsham1, Kathy K. Niakan1, Edward R.B. McCabe1•
University of California, Los Angeles1
01 Jan 2004-Gene Expression Patterns
TL;DR: ES cells are validated as a developmentally dynamic model for mechanistic investigations into this regulatory network early in embryogenesis preceding organogenesis and immunohistochemical analysis of preimplantation embryos for Ahch and key partners confirmed in vivo expression of network components.
Journal Article•10.1016/J.MODGEP.2004.01.014•
Expression and mapping of duplicate neuropilin-1 and neuropilin-2 genes in developing zebrafish

[...]

Diane E. Bovenkamp1, Katsutoshi Goishi2, Katsutoshi Goishi1, Nathan Bahary3, Alan J. Davidson4, Yi Zhou4, Thomas Becker5, Catherina G. Becker5, Leonard I. Zon4, Michael Klagsbrun1 •
Harvard University1, Asahikawa Medical College2, University of Pittsburgh3, Howard Hughes Medical Institute4, University of Hamburg5
01 Jul 2004-Gene Expression Patterns
TL;DR: Two nrp1 and two n rp2 genes, with expression patterns similar to higher vertebrates, have been isolated from zebrafish and an alternatively-spliced transcript of the nrP1b gene is identified which is predicted to encode a soluble form of NRp1b, containing only the a, b, and c extracellular domains.
Journal Article•10.1016/J.MODGEP.2004.01.010•
Differential expression of duplicated genes for brain-type fatty acid-binding proteins (fabp7a and fabp7b) during early development of the CNS in zebrafish (Danio rerio).

[...]

Rong-Zong Liu1, Eileen M. Denovan-Wright1, Agnes Degrave2, Christine Thisse2, Bernard Thisse2, Jonathan M. Wright1 •
Dalhousie University1, French Institute of Health and Medical Research2
01 Jul 2004-Gene Expression Patterns
TL;DR: Whole-mount in situ hybridization showed that the zebrafish fabp7a transcripts were distributed in the early developing central nervous system and were also detected in the swim bladder and pharynx during the embryonic to larval transitory phase.
Journal Article•10.1016/J.MODGEP.2003.09.002•
Transcriptional profiling identifies genes differentially expressed during and after migration in murine primordial germ cells.

[...]

Kathleen A. Molyneaux1, Ying Wang1, Kyle Schaible1, Chris Wylie1•
Hospital Research Foundation1
01 Mar 2004-Gene Expression Patterns
TL;DR: It is shown here that germ cells isolated during migration (at E10.5) will migrate actively to the genital ridges, whereas post-migratory PGCs isolated from E12.5 embryos are non-motile even when transferred into a permissive environment.
Journal Article•10.1016/J.MODGEP.2004.03.006•
Drapc1 expression during mouse embryonic development

[...]

Tomi Jukkola1, Natalia Sinjushina1, Juha Partanen1•
University of Helsinki1
01 Oct 2004-Gene Expression Patterns
TL;DR: Analysis of its spatiotemporal expression in mouse embryos showed that Drapc1 is expressed during development of the extraembryonic structures, nervous system, vascular system and inner ear, and is expressed in the mesenchyme of several developing organs at sites of epithelio-mesenchymal interactions.
Journal Article•10.1016/J.MODGEP.2004.01.006•
Lmx1b expression during joint and tendon formation: localization and evaluation of potential downstream targets.

[...]

Sandra D. Dreyer1, Sandra D. Dreyer2, Takuji Naruse3, Roy Morello1, Bernhard Zabel2, Andreas Winterpacht2, Randy L. Johnson, Brendan Lee1, Kerby C. Oberg3, Kerby C. Oberg1 •
Baylor College of Medicine1, Boston Children's Hospital2, Loma Linda University3
01 Jul 2004-Gene Expression Patterns
TL;DR: The tetrapod limb exhibits distinct dorsoventral joint, tendon, and muscle asymmetry and the LIM-homeodomain transcription factor, LMX1b, is required to achieve the dorsal character of these structures, but the mechanism by which Lmx1b orchestrates this asymmetrical development is unknown.
Journal Article•10.1016/S1567-133X(03)00148-0•
Parapineal specific expression of gfi1 in the zebrafish epithalamus.

[...]

Pascale Dufourcq1, Sepand Rastegar, Uwe Strähle, Patrick Blader1•
Paul Sabatier University1
01 Jan 2004-Gene Expression Patterns
TL;DR: The isolation of zebrafish growth factor independent 1 is described and an analysis of its pattern of expression during early development is presented, finding that gfi1 is expressed in the developing epithalamus in the dorsal diencephalon where its transcription is restricted to the parapineal.
Journal Article•10.1016/J.MODGEP.2004.04.008•
Otx2, Gbx2, and Fgf8 expression patterns in the chick developing inner ear and their possible roles in otic specification and early innervation.

[...]

Hortensia Sánchez-Calderón1, Gervasio Martín-Partido1, Matías Hidalgo-Sánchez1•
University of Extremadura1
01 Oct 2004-Gene Expression Patterns
TL;DR: A detailed description of the Otx2, Gbx2, and Fgf8 gene expression patterns in the chick developing inner ear is presented, comparing them with the Bmp4 expression, a putative sensory-organ marker, to suggest that expression domain boundaries could be involved in the specification of presumptive sensory patches.
Journal Article•10.1016/J.MODGEP.2004.04.006•
Hox/Pbx and Brn binding sites mediate Pax3 expression in vitro and in vivo.

[...]

Steven C. Pruitt1, Amy Bussman1, Alexander Y. Maslov1, Thomas A. Natoli1, Roy Heinaman1 •
Roswell Park Cancer Institute1
01 Oct 2004-Gene Expression Patterns
TL;DR: Four discrete DNA elements within the 1.6 kbp promoter fragment are shown by electrophoretic mobility shift assays (EMSA) to exhibit sequence specific interactions with proteins present in nuclear extracts from P19 EC cells induced to express Pax3 by treatment with retinoic acid.
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