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  3. Food Microbiology
  4. 2019
Showing papers in "Food Microbiology in 2019"
Journal Article•10.1016/J.FM.2018.11.005•
The use of next generation sequencing for improving food safety: Translation into practice.

[...]

Balamurugan Jagadeesan1, Peter Gerner-Smidt2, Marc W. Allard3, Sébastien Leuillet4, Anett Winkler, Yinghua Xiao, Samuel Chaffron5, Jos M.B.M. van der Vossen6, Silin Tang, Mitsuru Katase, Peter McClure, Bon Kimura7, Lay Ching Chai8, John W. Chapman, Kathleen Grant9 •
Nestlé1, Centers for Disease Control and Prevention2, Food and Drug Administration3, Institut Mérieux4, University of Nantes5, Netherlands Organisation for Applied Scientific Research6, Tokyo University of Marine Science and Technology7, University of Malaya8, Public Health England9
01 Jun 2019-Food Microbiology
TL;DR: The focus of this review is on the recent use and future potential of NGS in food microbiology and on current challenges, and how to critically interpret results and place them in a broader context.

285 citations

Journal Article•10.1016/J.FM.2019.103248•
Biochemical changes induced by dominant bacteria in chill-stored silver carp (Hypophthalmichthys molitrix) and GC-IMS identification of volatile organic compounds.

[...]

Shiliang Jia1, Yan Li1, Shuai Zhuang1, Xiaohui Sun1, Longteng Zhang1, Jing Shi1, Hui Hong1, Yongkang Luo1 •
China Agricultural University1
01 Dec 2019-Food Microbiology
TL;DR: P. psychrophila and S. putrefaciens were identified as the specific spoilage organisms (SSOs) of silver carp, suggesting that preservation researchers should focus on these two spoilage contributors in future studies.

162 citations

Journal Article•10.1016/J.FM.2019.01.008•
Volatile organic compounds (VOCs) produced by biocontrol yeasts.

[...]

Rosaria Contarino1, Selina Brighina1, Biagio Fallico1, Gabriella Cirvilleri1, Lucia Parafati1, Cristina Restuccia1 •
University of Catania1
01 Sep 2019-Food Microbiology
TL;DR: The level of yeast biocontrol efficacy through the production of volatiles could be the result of a synergistic effect between VOCs and carbon dioxide in the packaging environment.

126 citations

Journal Article•10.1016/J.FM.2018.11.006•
Fungal spores: Highly variable and stress-resistant vehicles for distribution and spoilage

[...]

Jan Dijksterhuis1•
Utrecht University1
01 Aug 2019-Food Microbiology
TL;DR: The discussion of the biology of spore formation, with the genus Aspergillus as an example, points to possible novel ways to eradicate fungal spore production in food.

125 citations

Journal Article•10.1016/J.FM.2019.04.013•
High-throughput sequencing analysis of bacterial community composition and quality characteristics in refrigerated pork during storage

[...]

Li Ning1, Youxiong Zhang, Qingping Wu, Qihui Gu, Moutong Chen, Yinzhi Zhang1, Xiulan Sun1, Jumei Zhang •
Jiangnan University1
01 Oct 2019-Food Microbiology
TL;DR: The predicted metabolic pathways, based o the data of 16S rDNA, indicated an abundant carbohydrate metabolism and amino metabolism in refrigerated pork, which provides insight into the determinants of shelf life.

115 citations

Journal Article•10.1016/J.FM.2018.08.011•
Effective inhibition of Salmonella Typhimurium in fresh produce by a phage cocktail targeting multiple host receptors.

[...]

Jaewoo Bai1, Byeonghwa Jeon2, Sangryeol Ryu1•
Seoul National University1, University of Alberta2
01 Feb 2019-Food Microbiology
TL;DR: A novel phage cocktail consisting of the three phages that target different host receptors, including flagella, O-antigen and BtuB, respectively, exhibited good antimicrobial efficiency, suggesting that it could reduce S. Typhimurium contamination of fresh produce.

112 citations

Journal Article•10.1016/J.FM.2019.03.019•
Effects of pomegranate peel extract on quality and microbiota composition of bighead carp (Aristichthys nobilis) fillets during chilled storage

[...]

Shuai Zhuang1, Yan Li1, Shiliang Jia1, Hui Hong1, Yiming Liu1, Yongkang Luo1 •
China Agricultural University1
01 Sep 2019-Food Microbiology
TL;DR: PPE prolonged the shelf-life of bighead carp fillets for about 2 days, and it has the potential to become a promising preservative in aquatic products.

112 citations

Journal Article•10.1016/J.FM.2018.12.014•
Large-scale mapping of microbial diversity in artisanal Brazilian cheeses.

[...]

Bruna A. Kamimura1, Bruna A. Kamimura2, Francesca De Filippis2, Anderson S. Sant'Ana1, Danilo Ercolini2 •
State University of Campinas1, University of Naples Federico II2
01 Jun 2019-Food Microbiology
TL;DR: A large-scale screening of the microbial ecology of 11 different types of artisanal cheeses produced in five geographical areas of Brazil highlighted the impact of geographical origin and mode of production on microbial diversity.

110 citations

Journal Article•10.1016/J.FM.2018.09.006•
Comparative evaluation of spoilage-related bacterial diversity and metabolite profiles in chilled beef stored under air and vacuum packaging

[...]

Ahmad Rois Mansur1, Eun-Ji Song1, Yongsun Cho, Young-Do Nam1, Yun-Sang Choi, Dae-Ok Kim2, Dong-Ho Seo, Tae Gyu Nam •
Korea University of Science and Technology1, Kyung Hee University2
01 Feb 2019-Food Microbiology
TL;DR: The results suggested several microbial VOCs that could be used as potential spoilage indicators, including acetic acid, butanoic acid, and 2-butanone in VP-stored beef and 3-methylbutan-1-ol, ethyl acetate, acetoin, 2- butanone, and diacetyl in air-storing beef.

103 citations

Journal Article•10.1016/J.FM.2019.04.008•
Influence of nitrogen status in wine alcoholic fermentation.

[...]

Antoine Gobert1, Raphaëlle Tourdot-Maréchal1, Céline Sparrow, Christophe Morge, Hervé Alexandre1 •
University of Burgundy1
01 Oct 2019-Food Microbiology
TL;DR: The consequences of nitrogen addition are presented, discussing the sources, time of addition, transcriptome changes, and effect on volatile compound composition.

99 citations

Journal Article•10.1016/J.FM.2019.05.010•
Efficacy of cold plasma functionalised water for improving microbiological safety of fresh produce and wash water recycling

[...]

Apurva Patange, Peng Lu, Daniela Boehm, Patrick J. Cullen1, Paula Bourke2 •
University of Sydney1, Queen's University Belfast2
25 May 2019-Food Microbiology
TL;DR: Aqueous ACP treatment poses a promising alternative for decontamination of fresh produce and the associated wash-waters which could be applied in the food industry to replace continuous chlorine dosing of process waters.
Journal Article•10.1016/J.FM.2018.08.008•
In situ riboflavin fortification of different kefir-like cereal-based beverages using selected Andean LAB strains.

[...]

Alba Yépez1, Pasquale Russo2, Giuseppe Spano2, Iuliia Khomenko, Franco Biasioli, Vittorio Capozzi2, Rosa Aznar3, Rosa Aznar1 •
University of Valencia1, University of Foggia2, Spanish National Research Council3
01 Feb 2019-Food Microbiology
TL;DR: Proton Transfer Reaction Time-of-Flight Mass Spectrometry (PTR-ToF-MS) analysis provided the on-line Volatile Organic Compounds profiles supporting the best combination of starter, LAB and cereal matrix for novel functional foods development.
Journal Article•10.1016/J.FM.2018.11.008•
Characteristic fruit wine production via reciprocal selection of juice and non-Saccharomyces species

[...]

Jianping Wei1, Yuxiang Zhang1, Yahong Yuan1, Lu Dai1, Tianli Yue1 •
Northwest A&F University1
01 Jun 2019-Food Microbiology
TL;DR: Considering overall acceptance by the panelists, correspondence analysis showed that Pichia kluyveri X31-10 (Pk31) was the most suitable strain for apple juice fermentation, and Fuji apple juice was the best substrate for this fermentation.
Journal Article•10.1016/J.FM.2019.04.001•
Survival of probiotic strain Lactobacillus paracasei L26 during co-fermentation with S. cerevisiae for the development of a novel beer beverage

[...]

Mei Zhi Alcine Chan1, Jian Yong Chua1, Mingzhan Toh1, Shao-Quan Liu1•
National University of Singapore1
01 Sep 2019-Food Microbiology
TL;DR: This was the first study demonstrating the feasibility of utilizing probiotic lactobacilli as starter cultures in beer brewing, and suggesting that beers could be a vehicle for probiotic delivery under appropriate conditions.
Journal Article•10.1016/J.FM.2018.08.009•
Metabolism of phenolic acids in whole wheat and rye malt sourdoughs.

[...]

Valery Ripari1, Yunpeng Bai2, Michael G. Gänzle2, Michael G. Gänzle3•
Marche Polytechnic University1, University of Alberta2, Hubei University of Technology3
01 Feb 2019-Food Microbiology
TL;DR: Phenolic acid metabolism in sourdoughs was enhanced by co-fermentation with strains exhibiting complementary metabolic activities, and results may enable improvement of bread quality by targeted conversion of phenolic acids during Sourdough fermentation.
Journal Article•10.1016/J.FM.2018.03.016•
Mould spoilage of foods and beverages: Using the right methodology.

[...]

Emilia Rico-Munoz, Robert A. Samson, Jos Houbraken
01 Aug 2019-Food Microbiology
TL;DR: There is no complete and easy method for the detection of fungi in food and more research is needed on the development of methods of detection and identification that are both faster and highly sensitive.
Journal Article•10.1016/J.FM.2019.02.012•
Comparison of bacterial diversity in traditionally homemade paocai and Chinese spicy cabbage.

[...]

Zhanggen Liu1, Zhen Peng1, Tao Huang1, Yangsheng Xiao1, Junyi Li1, Mingyong Xie1, Tao Xiong1 •
Nanchang University1
22 Feb 2019-Food Microbiology
TL;DR: In insights into the relationship between bacterial profiles and environmental factors in Chinese spicy cabbage and paocai, the composition of the microbial community was positively correlated with total titratable acidity, lactic acid and acetic acid contents but was negatively correlated with salinity.
Journal Article•10.1016/J.FM.2019.02.017•
Tetragenococcus halophilus MJ4 as a starter culture for repressing biogenic amine (cadaverine) formation during saeu-jeot (salted shrimp) fermentation

[...]

Kyung Hyun Kim1, Se Hee Lee, Byung Hee Chun1, Sang Eun Jeong1, Che Ok Jeon1 •
Chung-Ang University1
21 Mar 2019-Food Microbiology
TL;DR: It is suggested that the use of strain MJ4 as a starter culture in salted fish fermentation may be a good strategy for the reduction of BA formation.
Journal Article•10.1016/J.FM.2019.01.001•
Shifts in diversity and function of the bacterial community during the manufacture of Fu brick tea

[...]

Qin Li1, Yongdi Li1, Yu Luo2, Yiyang Zhang1, Yuan Chen1, Haiyan Lin1, Kunbo Wang1, Jianan Huang1, Zhonghua Liu1 •
Hunan Agricultural University1, Zhejiang University2
07 Jan 2019-Food Microbiology
TL;DR: This work investigated bacterial community structure as well as the predicted functions of identified bacteria and their correlations with chemical compounds during the manufacturing process to increase the understanding of the core functional bacterial genera involved in the manufacture of Fu brick tea.
Journal Article•10.1016/J.FM.2019.05.001•
Salmonella spp. and Escherichia coli O157:H7 prevalence and levels on lettuce: A systematic review and meta-analysis.

[...]

Susana de Oliveira Elias1, Tiago Baptista Noronha, Eduardo Cesar Tondo1•
Universidade Federal do Rio Grande do Sul1
01 Dec 2019-Food Microbiology
TL;DR: A systematic review and meta-analysis of reported prevalence and levels of Salmonella spp.
Journal Article•10.1016/J.FM.2019.05.012•
Association of fungal genera from spoiled processed foods with physicochemical food properties and processing conditions.

[...]

Abigail B. Snyder1, John J. Churey2, Randy W. Worobo2•
Ohio State University1, Cornell University2
29 May 2019-Food Microbiology
TL;DR: Evaluating the influence of intrinsic and extrinsic food product variables on the identity of spoilage fungi genera isolated from commercially produced foods indicated that production failures, in addition to product-specific attributes, were responsible for determination of the most probable spoilage organism.
Journal Article•10.1016/J.FM.2019.04.007•
Effect of ε-polylysine and ice storage on microbiota composition and quality of Pacific white shrimp (Litopenaeus vannamei) stored at 0 °C

[...]

Shiliang Jia1, Yiming Liu1, Shuai Zhuang1, Xiaohui Sun1, Yan Li1, Hui Hong1, Yuanmeng Lv, Yongkang Luo1 •
China Agricultural University1
01 Oct 2019-Food Microbiology
TL;DR: Modulating effect of ε-Polylysine and ice storage altered the microbiota composition and delayed quality deterioration of Pacific white shrimp.
Journal Article•10.1016/J.FM.2018.10.019•
The contribution of fast growing, psychrotrophic microorganisms on biodiversity of refrigerated raw cow's milk with high bacterial counts and their food spoilage potential

[...]

Julia Hahne1, Damaris Isele1, Julia Berning1, André Lipski1•
University of Bonn1
01 Jun 2019-Food Microbiology
TL;DR: The microbial diversity of 48 samples from bulk tank raw cow's milk with bacterial counts >100,000 cfu/mL from different geographic regions was analyzed, showing that storage of raw milk under refrigeration does not always lead to a selection of cold-adapted bacteria.
Journal Article•10.1016/J.FM.2019.04.004•
Role of biocontrol yeasts Debaryomyces hansenii and Wickerhamomyces anomalus in plants' defence mechanisms against Monilinia fructicola in apple fruits.

[...]

Monika Czarnecka1, Barbara Żarowska1, Xymena Połomska1, Cristina Restuccia2, Gabriella Cirvilleri2 •
Wroclaw University of Environmental and Life Sciences1, University of Catania2
01 Oct 2019-Food Microbiology
TL;DR: The results confirmed the ability of killer yeasts to influence host-defence related enzyme activities in apple fruit tissue and may suggest that AII4b killer strain has a potential as biocontrol agent prior to infection by triggering immune response mechanisms in plant tissue, whereas BS91 strain is the most effective during pathogen infection and could be used asBiocontroll agent in postharvest disease onset.
Journal Article•10.1016/J.FM.2018.06.004•
Inactivation of conidia from three Penicillium spp. isolated from fruit juices by conventional and alternative mild preservation technologies and disinfection treatments

[...]

Masja Nierop Groot1, Tjakko Abee1, Hermien van Bokhorst-van de Veen1•
Wageningen University and Research Centre1
01 Aug 2019-Food Microbiology
TL;DR: The results show that Penicillium spp.
Journal Article•10.1016/J.FM.2019.103277•
Ultrasound treatment combined with fumaric acid for inactivating food-borne pathogens in apple juice and its mechanisms.

[...]

Ji-Sook Park1, Jae-Won Ha1•
Hankyong National University1
01 Dec 2019-Food Microbiology
TL;DR: It is suggested that simultaneous application of US treatment and FA is a novel method for ensuring the microbial safety of apple juice and damage to the cell envelope was strongly related to the synergistic microbial inactivation.
Journal Article•10.1016/J.FM.2018.12.002•
The utilisation of nitrogenous compounds by commercial non-Saccharomyces yeasts associated with wine.

[...]

Kelly J. Prior1, Florian Bauer1, Benoit Divol1•
Stellenbosch University1
01 Jun 2019-Food Microbiology
TL;DR: The data suggest that declining populations of non-Saccharomyces yeasts release nitrogen and supports the activity of S. cerevisiae, and provide the most detailed assessment of nitrogen utilisation by the investigated yeast strains in a wine environment.
Journal Article•10.1016/J.FM.2019.05.005•
Influence of cell-cell contact between L. thermotolerans and S. cerevisiae on yeast interactions and the exo-metabolome.

[...]

Clément Petitgonnet1, Géraldine Klein1, Chloé Roullier-Gall1, Philippe Schmitt-Kopplin, Beatriz Quintanilla-Casas2, Stefania Vichi2, Diane Julien-David3, Hervé Alexandre1 •
University of Burgundy1, University of Barcelona2, University of Strasbourg3
17 May 2019-Food Microbiology
TL;DR: This study shows that cell-cell contact not only affects cell viability, as already reported, but markedly affects yeast metabolism, as the volatile-compound profile was significantly different from that of sequential fermentation without cell- cell contact.
Journal Article•10.1016/J.FM.2018.08.007•
Changes in the microbial communities in vacuum-packaged smoked bacon during storage.

[...]

Li Xinfu1, Cong Li1, Hua Ye1, Zhouping Wang1, Wu Xiang, Han Yanqing, Xu Baocai2, Xu Baocai1 •
Jiangnan University1, Hefei University of Technology2
01 Feb 2019-Food Microbiology
TL;DR: High-throughout sequencing (HTS) showed that the microbial composition changed greatly with the prolongation of storage time, and Serratia, Rahnella, Fusobacterium and Lactococcus underwent a dramatic increase at some point in individual batchs which may be considered as potential contributors to the spoilage.
Journal Article•10.1016/J.FM.2019.04.002•
Farm-to-fork profiling of bacterial communities associated with an artisan cheese production facility.

[...]

Justin Falardeau1, Kristie M. Keeney1, Aljosa Trmcic1, David D. Kitts1, Siyun Wang1 •
University of British Columbia1
01 Oct 2019-Food Microbiology
TL;DR: The various stages of the cheese-making process harbor distinct bacterial communities which may influence the sensory characteristics of artisanal cheeses, and sequences grouped into operational taxonomic units (OTUs) by phylotype at the genus level were analyzed.
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