Zi Peng Fan
Massachusetts Institute of Technology
35 Papers
1.1K Citations
Zi Peng Fan is an academic researcher from Massachusetts Institute of Technology. The author has contributed to research in topics: Transcription factor & Gene. The author has an hindex of 24, co-authored 35 publications. Previous affiliations of Zi Peng Fan include Boston Children's Hospital & Agios Pharmaceuticals.
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Papers
Activation of proto-oncogenes by disruption of chromosome neighborhoods
Denes Hnisz,Abraham S. Weintraub,Daniel S. Day,Anne-Laure Valton,Rasmus O. Bak,Charles H. Li,Johanna Goldmann,Bryan R. Lajoie,Zi Peng Fan,Alla A. Sigova,Jessica Reddy,Diego Borges-Rivera,Tong Ihn Lee,Rudolf Jaenisch,Matthew H. Porteus,Job Dekker,Job Dekker,Richard A. Young +17 more
TL;DR: Insulated neighborhoods in T cell acute lymphoblastic leukemia (T-ALL) are mapped and it is found that tumor cell genomes contain recurrent microdeletions that eliminate the boundary sites of insulated neighborhoods containing prominent T-ALL proto-oncogenes.
1K
Systematic Identification of Culture Conditions for Induction and Maintenance of Naive Human Pluripotency
Thorold W. Theunissen,Benjamin E. Powell,Haoyi Wang,Maya Mitalipova,Dina A. Faddah,Jessica Reddy,Zi Peng Fan,Dorothea Maetzel,Kibibi Ganz,Linyu Shi,Tenzin Lungjangwa,Sumeth Imsoonthornruksa,Yonatan Stelzer,Sudharshan Rangarajan,Ana C. D’Alessio,Jianming Zhang,Qing Gao,Meelad M. Dawlaty,Richard A. Young,Nathanael S. Gray,Rudolf Jaenisch +20 more
TL;DR: In this paper, the authors identify small molecules that support self-renewal of naive human ESCs based on maintenance of endogenous OCT4 distal enhancer activity, a molecular signature of ground state pluripotency.
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Systematic Identification of Culture Conditions for Induction and Maintenance of Naive Human Pluripotency
Thorold W. Theunissen,Benjamin E. Powell,Haoyi Wang,Maya Mitalipova,Dina A. Faddah,Jessica Reddy,Zi Peng Fan,Dorothea Maetzel,Kibibi Ganz,Linyu Shi,Tenzin Lungjangwa,Sumeth Imsoonthornruksa,Yonatan Stelzer,Sudharshan Rangarajan,Ana C. D’Alessio,Jianming Zhang,Qing Gao,Meelad M. Dawlaty,Richard A. Young,Nathanael S. Gray,Rudolf Jaenisch +20 more
- 01 Jul 2014
TL;DR: Comparison with previously reported naive human ESCs indicates that the conditions captured in this study capture a distinct pluripotent state in humans that closely resembles that of mouse ESCs.
678
Control of Cell Identity Genes Occurs in Insulated Neighborhoods in Mammalian Chromosomes
Jill M. Dowen,Zi Peng Fan,Denes Hnisz,Gang Ren,Brian J. Abraham,Abraham S. Weintraub,Jurian Schuijers,Tong Ihn Lee,Keji Zhao,Lyndon Nuoxi Zhang,Richard A. Young +10 more
- 01 Oct 2014
TL;DR: In this article, the authors used ESC cohesin ChIA-PET data to identify the local chromosomal structures at both active and repressed genes across the genome and reveal that super-enhancer-driven genes generally occur within chromosome structures that are formed by the looping of two interacting CTCF sites co-occupied by co-hesin.
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Activation of proto-oncogenes by disruption of chromosome neighborhoods
Denes Hnisz,Daniel S. Day,Anne-Laure Valton,Rasmus O. Bak,Johanna Goldmann,Bryan R. Lajoie,Alla A. Sigova,Tong Ihn Lee,Matthew H. Porteus,Job Dekker,Abraham S. Weintraub,Charles H. Li,Jessica Reddy,Diego Borges-Rivera,Rudolf Jaenisch,Zi Peng Fan,Richard A. Young +16 more
- 01 Nov 2015
TL;DR: Wala et al. as discussed by the authors investigated whether proto-oncogenes occur within these structures and whether oncogene activation can occur via disruption of insulated neighborhood boundaries in cancer cells.
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