Zahra Waheed
European Bioinformatics Institute
7 Papers
Zahra Waheed is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: European Nucleotide Archive & Computer science. The author has an hindex of 1, co-authored 2 publications.
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Papers
The European Nucleotide Archive in 2020.
Peter W. Harrison,Alisha Ahamed,Raheela Aslam,Blaise T. F. Alako,Josephine Burgin,Nicola Buso,Mélanie Courtot,Jun Fan,Dipayan Gupta,Muhammad Haseeb,Sam Holt,Talal Ibrahim,Eugene Ivanov,Suran Jayathilaka,Vishnukumar Balavenkataraman Kadhirvelu,Manish Kumar,Rodrigo Lopez,Simon Kay,Rasko Leinonen,Xin Liu,Colman O’Cathail,Amir Pakseresht,Youngmi Park,Stephane Pesant,Nadim Rahman,Jeena Rajan,Alexey Sokolov,Senthilnathan Vijayaraja,Zahra Waheed,Ahmad Zyoud,Tony Burdett,Guy Cochrane +31 more
TL;DR: The major developments to ENA services and content in 2020 are highlighted, focussing in particular on the recently released updated ENA browser, modernisation of the release process and the authors' data coordination collaborations with specific research communities.
The European Nucleotide Archive in 2021.
Carla Cummins,Alisha Ahamed,Raheela Aslam,Josephine Burgin,Rajkumar Devraj,Ossama Edbali,Dipayan Gupta,Peter W. Harrison,Muhammad Haseeb,Sam Holt,Talal Ibrahim,Eugene Ivanov,Suran Jayathilaka,Vishnukumar Balavenkataraman Kadhirvelu,Simon Kay,Manish Kumar,Ankur Lathi,Rasko Leinonen,Fábio Madeira,Nandana Madhusoodanan,Milena Mansurova,Colman O’Cathail,Matt Pearce,Stephane Pesant,Nadim Rahman,Jeena Rajan,Gabriele Rinck,Sandeep Selvakumar,Alexey Sokolov,Swati Suman,Ross Thorne,Prabhat Totoo,Senthilnathan Vijayaraja,Zahra Waheed,Ahmad Zyoud,Rodrigo Lopez,Tony Burdett,Guy Cochrane +37 more
TL;DR: The European Nucleotide Archive (ENA) as mentioned in this paper provides a collection of open nucleotide sequencing data, both for deposition of, and access to, open DNA sequencing data and for open scientific data.
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The European Nucleotide Archive in 2022
Josephine Burgin,Alisha Ahamed,Carla A. Cummins,Rajkumar Devraj,K. Gueye,Dipayan Sen Gupta,Vikas Gupta,Muhammad Haseeb,Maira Ihsan,Eugene Ivanov,Suran Jayathilaka,Vishnukumar Balavenkataraman Kadhirvelu,Manish Kumar,Ankur Lathi,Rasko Leinonen,Milena Mansurova,Jasmine McKinnon,Colman O'Cathail,Joana Paupério,Stephane Pesant,Nadim Rahman,Gabriele Rinck,S. Selvakumar,Swati Suman,Senthilnathan Vijayaraja,Zahra Waheed,Peter Woollard,David Yuan,Ahmad M-S Zyoud,Tony Burdett,Guy Cochrane +30 more
TL;DR: The European Nucleotide Archive (ENA) as discussed by the authors is an open and supported platform for the management, archiving, publication, and dissemination of data; and to the scientific community as a whole, it offers a globally comprehensive data set through a host of data discovery and retrieval tools.
The European Nucleotide Archive in 2023.
David Yuan,Alisha Ahamed,Josephine Burgin,Carla A. Cummins,Rajkumar Devraj,Khadim Gueye,Dipayan Sen Gupta,Vikas Gupta,Muhammad Haseeb,Maira Ihsan,Eugene Ivanov,Suran Jayathilaka,Vishnukumar Balavenkataraman Kadhirvelu,Manish Kumar,Ankur Lathi,Rasko Leinonen,Jasmine McKinnon,Lili Meszaros,Colman O'Cathail,Dennis Ouma,Joana Paupério,Stephane Pesant,Nadim Rahman,Gabriele Rinck,S. Selvakumar,Swati Suman,Yanisa Sunthornyotin,Marianna Ventouratou,Senthilnathan Vijayaraja,Zahra Waheed,Peter Woollard,Ahmad M-S Zyoud,Tony Burdett,Guy Cochrane +33 more
TL;DR: Recent progress and improvements to ENA services are described and three areas of work in 2023 are focused upon: FAIRness of ENA data, pandemic preparedness and foundational technology.
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Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses
Nadim Rahman,Colman O'Cathail,Ahmad M-S Zyoud,Alexey Sokolov,Bas B. Oude Munnink,Björn Grüning,Carla A. Cummins,Clara Amid,David F. Nieuwenhuijse,Dávid Visontai,David Yuan,Dipayan Sen Gupta,Divyae K. Prasad,Gabor Gulyas,Gabriele Rinck,Jasmine McKinnon,Jeena Rajan,Jeff Knaggs,Jeffrey Edward Skiby,József Stéger,Judit Szarvas,K. Gueye,Krisztián Papp,M. R. Hoek,Manish Kumar,Marianna Ventouratou,Marie-Catherine Bouquieaux,Milena Mansurova,Muhammad Haseeb,Nathalie Worp,Peter W. Harrison,Rasko Leinonen,Ross Thorne,S. Selvakumar,Sarah E. Hunt,Sundar Venkataraman,Suran Jayathilaka,Timothee Cezard,Wolf-Martin Maier,Zahra Waheed,Zamin Iqbal,Frank Møller Aarestrup,István Csabai,Marion Koopmans,Tony Burdett,Guy Cochrane +45 more
TL;DR: The European COVID-19 Data Platform was launched to support this data sharing, and has resulted in the deposition of several million SARS-CoV-2 raw reads as mentioned in this paper , which resulted in an unprecedented level of data sharing to open repositories.