Yuling Li
California Institute of Technology
7 Papers
215 Citations
Yuling Li is an academic researcher from California Institute of Technology. The author has contributed to research in topics: WormBase & WormBook. The author has an hindex of 7, co-authored 7 publications. Previous affiliations of Yuling Li include Washington University in St. Louis.
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Papers
WormBase 2016: expanding to enable helminth genomic research
Kevin L. Howe,Bruce J. Bolt,Scott Cain,Juancarlos Chan,Wen J. Chen,Paul Davis,James Done,Thomas A. Down,Sibyl Gao,Christian A. Grove,Todd W. Harris,Ranjana Kishore,Raymond Lee,Jane Lomax,Yuling Li,Hans-Michael Müller,Cecilia Nakamura,Paulo A. S. Nuin,Michael Paulini,Daniela Raciti,Gary Schindelman,Eleanor J Stanley,Mary Ann Tuli,Kimberly Van Auken,Daniel Wang,Xiaodong Wang,Gary Williams,Adam Wright,Karen Yook,Matthew Berriman,Paul J. Kersey,Tim Schedl,Lincoln Stein,Paul W. Sternberg +33 more
TL;DR: WormBase (www.wormbase.org) is a central repository for research data on the biology, genetics and genomics of Caenorhabditis elegans and other nematodes, and has made a number of improvements to its main website, including new tools for browsing genomic features and ontology annotations.
WormBase 2012: more genomes, more data, new website
Karen Yook,Todd W. Harris,Tamberlyn Bieri,Abigail Cabunoc,Juancarlos Chan,Wen J. Chen,Paul H. Davis,Norie De La Cruz,Adrian Duong,Ruihua Fang,Uma Ganesan,Christian A. Grove,Kevin L. Howe,Snehalata Kadam,Ranjana Kishore,Raymond Lee,Yuling Li,Hans-Michael Müller,Cecilia Nakamura,Bill Nash,Philip Ozersky,Michael Paulini,Daniela Raciti,Arun Rangarajan,Gary Schindelman,Xiaoqi Shi,Erich M. Schwarz,Mary Ann Tuli,Kimberly Van Auken,Daniel Wang,Xiaodong Wang,Gary Williams,Jonathan Hodgkin,Matthew Berriman,Richard Durbin,Paul J. Kersey,John Spieth,Lincoln Stein,Paul W. Sternberg +38 more
TL;DR: This work has automated the identification of key data in the scientific literature and use similar methodology for data extraction to enhance the rate of curation, and introduced a dramatic overhaul of the WormBase website for public beta testing.
Textpresso Central: a customizable platform for searching, text mining, viewing, and curating biomedical literature
TL;DR: The next generation of the Textpresso information retrieval system, TextPresso Central (TPC), builds on the strengths of the original system by expanding the full text corpus to include the PubMed Central Open Access Subset (PMC OA), as well as the WormBase C. elegans bibliography.
Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR
Kimberly Van Auken,Petra Fey,Tanya Z. Berardini,Robert J. Dodson,Laurel Cooper,Donghui Li,Juancarlos Chan,Yuling Li,S. Basu,Hans-Michael Müller,Rex L. Chisholm,Eva Huala,Paul W. Sternberg +12 more
TL;DR: It is found that, with organism-specific modifications, Textpresso can be used by dictyBase and TAIR to annotate gene productions to GO's Cellular Component (CC) ontology.
A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework
Anita Bandrowski,Jonathan Cachat,Yuling Li,Hans-Michael Müller,Paul W. Sternberg,Paolo Ciccarese,Timothy Clark,Luis N. Marenco,Rixin Wang,Vadim Astakhov,Jeffrey S. Grethe,Maryann E. Martone +11 more
TL;DR: The experiences and successes with developing automated resource discovery and semiautomated type characterization with text-mining scripts that facilitate curation team efforts to discover, integrate and display new content are described.