Xinyin Han
Chinese Academy of Sciences
12 Papers
13 Citations
Xinyin Han is an academic researcher from Chinese Academy of Sciences. The author has contributed to research in topics: Cancer genome sequencing & Computer science. The author has an hindex of 3, co-authored 11 publications.
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Papers
Comparative genomic and transcriptomic analyses uncover the molecular basis of high nitrogen use efficiency in the wheat cultivar Kenong 9204.
Xiaoli Shi,Fa Cui,Xinyin Han,Yilin He,Long Zhao,Na Zhang,Haidong Zhu,Zhexin Liu,Bin Ma,Shusong Zheng,Wei Zhang,Jiajia Liu,Xiaoli Fan,Yaoqi Si,Shuiquan Tian,Jianqing Niu,Huilan Wu,Xuemei Liu,Zhuo Chen,Deyuan Meng,Hao Zhang,Xiaoyan Wang,Liqiang Song,Lijing Sun,Jie Han,Hui Zhao,Jun Ji,Zhiguo Wang,Xiaoyu He,Ruilin Li,Xuebin Chi,Chengzhi Liang,Beifang Niu,Jun Xiao,Junming Li,Hong-Qing Ling +35 more
TL;DR: Zhang et al. as discussed by the authors found that the high-affinity nitrate transporter gene family had expanded in Triticeae and subsequent functional differentiation endowed the expanded family members with saline inducibility, providing a genetic basis for improving the adaptation of wheat to nitrogen deficiency in various habitats.
85
MSIsensor-ct: microsatellite instability detection using cfDNA sequencing data.
Xinyin Han,Shuying Zhang,Daniel Cui Zhou,Dongliang Wang,Xiaoyu He,Danyang Yuan,Ruilin Li,Jiayin He,Xiaohong Duan,Michael C. Wendl,Li Ding,Beifang Niu +11 more
TL;DR: MSIsensor-ct as discussed by the authors is a bioinformatics tool based on a machine learning protocol, dedicated to detecting MSI status using cfDNA sequencing data with a potential stable MSIscore threshold of 20%.
24
Comprehensive fundamental somatic variant calling and quality management strategies for human cancer genomes.
Xiaoyu He,Shanyu Chen,Ruilin Li,Xinyin Han,Zhipeng He,Danyang Yuan,Shuying Zhang,Xiaohong Duan,Beifang Niu +8 more
TL;DR: The most widely used software for the fundamental analysis and QC of cancer genome sequencing data is investigated and instructions for selecting the most appropriate software and pipelines to ensure precise and efficient conclusions are provided.
16
Comprehensive review and evaluation of computational methods for identifying FLT3-internal tandem duplication in acute myeloid leukaemia.
Danyang Yuan,Xiaoyu He,Xinyin Han,Yang Chunyan,Fei Liu,Shuying Zhang,Haijing Luan,Ruilin Li,Jiayin He,Xiaohong Duan,Dongliang Wang,Zhou Qiming,Sujun Gao,Beifang Niu +13 more
TL;DR: A comprehensive review of the existing methods for detecting FLT3-ITD is provided in this paper, where the authors compared the qualitative and quantitative detection capabilities of six representative tools using simulated and biological data.
6
Identification of a Novel Immune-Related CpG Methylation Signature to Predict Prognosis in Stage II/III Colorectal Cancer
Feng Chen,Lijuan Pei,Siyao Liu,Yan Lin,Xinyin Han,Erhong Meng,Xintong Wang,Shuai Hong,Dongliang Wang,Feide Liu,Yang Fei,Guangda Wang +11 more
TL;DR: Wang et al. as discussed by the authors identified five immune-related methylated CG sites that could be used as an efficient overall survival (OS)-related biomarker for stage II/III colorectal cancer patients.