William L. Jorgensen
Yale University
594 Papers
6.5K Citations
William L. Jorgensen is an academic researcher from Yale University. The author has contributed to research in topics: Chemistry & Racism. The author has an hindex of 108, co-authored 586 publications. Previous affiliations of William L. Jorgensen include University of California, Los Angeles & University of Barcelona.
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Papers
Comparison of simple potential functions for simulating liquid water
TL;DR: In this article, the authors compared the Bernal Fowler (BF), SPC, ST2, TIPS2, TIP3P, and TIP4P potential functions for liquid water in the NPT ensemble at 25°C and 1 atm.
39.4K
Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic Liquids
TL;DR: In this article, the parametrization and testing of the OPLS all-atom force field for organic molecules and peptides are described, and the parameters for both torsional and non-bonded energy properties have been derived, while the bond stretching and angle bending parameters have been adopted mostly from the AMBER force field.
14.2K
The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin.
TL;DR: A complete set of intermolecular potential functions has been developed for use in computer simulations of proteins in their native environment and they have been parametrized directly to reproduce experimental thermodynamic and structural data on fluids.
4.8K
Evaluation and Reparametrization of the OPLS-AA Force Field for Proteins via Comparison with Accurate Quantum Chemical Calculations on Peptides†
TL;DR: In this article, a fitting technique combines using accurate ab initio data as the target, choosing an efficient fitting subspace of the whole potential energy surface, and determining weights for each of the fitting points based on magnitudes of the potential energy gradient.
OPLS3: A Force Field Providing Broad Coverage of Drug-like Small Molecules and Proteins
Edward Harder,Wolfgang Damm,Jon R. Maple,Chuanjie Wu,Mark Reboul,Jin Yu Xiang,Lingle Wang,Dmitry Lupyan,Markus K. Dahlgren,Jennifer L. Knight,Joseph W. Kaus,David S. Cerutti,Goran Krilov,William L. Jorgensen,Robert Abel,Richard A. Friesner +15 more
TL;DR: Together, the improvements made to both the small molecule and protein force field lead to a high level of accuracy in predicting protein-ligand binding measured over a wide range of targets and ligands (less than 1 kcal/mol RMS error) representing a 30% improvement over earlier variants of the OPLS force field.
2.8K