Victor Jongeneel
University of Illinois at Urbana–Champaign
4 Papers
8 Citations
Victor Jongeneel is an academic researcher from University of Illinois at Urbana–Champaign. The author has contributed to research in topics: Genomics & Exome sequencing. The author has an hindex of 3, co-authored 4 publications.
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Papers
Research capacity. Enabling the genomic revolution in Africa
Charles N. Rotimi,Akin Abayomi,Alash'le Abimiku,Victoria Adabayeri,Clement Adebamowo,Ezekiel Adebiyi,Adebowale D. Ademola,Adebowale Adeyemo,Dwomoa Adu,Dissou Affolabi,Godfred Agongo,Samuel Ajayi,Sally N Akarolo-Anthony,Rufus Akinyemi,Albert Akpalu,Marianne Alberts,Orlando Alonso Betancourt,Ahmed M. Alzohairy,Gobena Ameni,Olukemi K. Amodu,Gabriel Anabwani,Kristian G. Andersen,Fatiu A Arogundade,Oyedunni Arulogun,Danny Asogun,Rasheed Bakare,Naby Balde,Mary Lynn Baniecki,Christine Beiswanger,Alia Benkahla,Lara Bethke,M Boehnke,Vincent Boima,James Brandful,Andrew Brooks,Frank C. Brosius,Chester W. Brown,Bruno Bucheton,David T. Burke,Barrington G. Burnett,Stacy Carrington-Lawrence,Nadia Carstens,John Chisi,Alan Christoffels,Richard S. Cooper,Heather J. Cordell,Nigel J. Crowther,Talishiea Croxton,Jantina de Vries,Leslie Derr,Peter Donkor,Seydou Doumbia,Audrey Duncanson,Ivy Ekem,Ahmed El Sayed,Mark E Engel,John Enyaru,Dean Everett,Faisal M. Fadlelmola,Eyitayo Fakunle,Kenneth H. Fischbeck,Anne Fischer,Onikepe A. Folarin,Junaid Gamieldien,Robert F. Garry,Simani Gaseitsiwe,Rasheed Gbadegesin,Anita Ghansah,Maria Y. Giovanni,Parham Goesbeck,F. Xavier Gómez-Olivé,Donald S. Grant,Ravnit Grewal,Mark S. Guyer,Neil A. Hanchard,Christian T. Happi,Scott Hazelhurst,Branwen J. Hennig,Christiane Hertz-Fowler,Winston Hide,Friedhelm Hilderbrandt,Christopher Hugo-Hamman,Muntaser E. Ibrahim,Regina James,Yasmina Jaufeerally-Fakim,Carolyn Jenkins,Ute Jentsch,Pan Pan Jiang,Moses Joloba,Victor Jongeneel,Fourie Joubert,Mukthar Kader,Kathleen Kahn,Pontiano Kaleebu,Saidi Kapiga,Samar K. Kassim,Ishmael Kasvosve,Jonathan K. Kayondo,Bernard Keavney,Adeodata Kekitiinwa,Sheik Humarr Khan,Paul L. Kimmel,Mary Claire King,Robert Kleta,Mathurin Koffi,Jeffrey B. Kopp,Matthias Kretzler,Judit Kumuthini,Samuel Kyobe,Catherine Kyobutungi,Daniel T. Lackland,Karen A. Lacourciere,Guida Landouré,Rita T. Lawlor,Thomas Lehner,Maia Lesosky,Naomi S. Levitt,Katherine Littler,Zané Lombard,Jeanne F. Loring,Sylvester Leonard Lyantagaye,Annette MacLeod,Ebony B. Madden,Chengetai R. Mahomva.,Julie Makani,Manmak Mamven,Marape Marape,Graeme Mardon,Patricia A. Marshall,Darren P. Martin,Daniel K. Masiga,Robin Mason,Michael Mate-Kole,Enock Matovu,Mary T Mayige,Mary T Mayige,Bongani M. Mayosi,Jean Claude Mbanya,Sheryl A. McCurdy,Mark I. McCarthy,Helen McIlleron,Seth O. McLigeyo,Corrine Merle,Ana Olga Mocumbi,Charles Mondo,John V. Moran,Ayesha A. Motala,Marva Moxey-Mims,Sununguko Wata Mpoloka,Chisomo L. Msefula,Thuli Mthiyane,Nicola Mulder,Gebregziabher Mulugeta,Dieuodonne Mumba,John Musuku,Mo Nagdee,Oyekanmi Nash,Daouda Ndiaye,Anh Quynh Nguyen,Mark P. Nicol,Oathokwa Nkomazana,Shane A. Norris,Betty Nsangi,Alexander K. Nyarko,Moffat Nyirenda,Eileen Obe,Reginald Obiakor,Abraham Oduro,Solomon F. Ofori-Acquah,Okechukwu S Ogah,S.W.O. Ogendo,Kwaku Ohene-Frempong,Akinlolu O. Ojo,T O Olanrewaju,John Oli,Charlotte Osafo,Odile Ouwe Missi Oukem-Boyer,Bruce Ovbiagele,Andrew Owen,Mayowa O. Owolabi,Lukman Owolabi,Ellis Owusu-Dabo,Guillaume Paré,Rulan S. Parekh,Hugh-G. Patterton,Margaret B. Penno.,Jane Peterson,Rembert Pieper,Jacob Plange-Rhule,Martin R. Pollak,Julia Puzak,Rajkumar Ramesar,Michèle Ramsay,Rebekah S. Rasooly,Shiksha Reddy,Pardis C. Sabeti,Kwamena W. Sagoe,Tunde Salako,Oumar Samassekou,Manjinder S. Sandhu,Manjinder S. Sandhu,Manjinder S. Sandhu,Osman Sankoh,Fred Stephen Sarfo,Marie Sarr,Gasnat Shaboodien,Issa Sidibe,Gustave Simo,Martin Simuunza,Liam Smeeth,Eugene Sobngwi,Himla Soodyall,Hermann Sorgho,Oumou Sow Bah,Sudha Srinivasan,Dan J. Stein,Ezra Susser,Carmen Swanepoel,Godfred Tangwa,Andrew Tareila,Özlem Tastan Bishop,Bamidele O. Tayo,Nicki Tiffin,Halidou Tinto,Ekaete Tobin,Stephen Tollman,Mahamadou Traoré,Marsha Treadwell,Jennifer L. Troyer,Masego Tsimako-Johnstone,Vincent Tukei,Ifeoma Ulasi,Nzovu Ulenga,Beverley van Rooyen,Ablo Prudence Wachinou,Salina P. Waddy,Alisha N. Wade,Misaki Wayengera,James A. G. Whitworth,Louise Wideroff,Cheryl A. Winkler,Sarah Winnicki,Ambroise Wonkam,Mengistu Tadase Yewondwossen,Nathan L. Yozwiak,Heather J. Zar +245 more
TL;DR: If the dearth of genomics research involving Africans persists, the potential health and economic benefits emanating from genomic science may elude an entire continent.
Validation of Illumina's Isaac variant calling workflow.
Liudmila Sergeevna Mainzer,Brad Chapman,Oliver Hofmann,Gloria Rendon,Zachary D. Stephens,Victor Jongeneel +5 more
TL;DR: The overall conclusion from the analysis is that the Isaac workflow has undergone substantial improvement from version 01.11.27 to Isaac_2.0, and the call accuracy is especially high on NA12878, however exomes tend to have a high fraction of false positive calls.
Archon Genomics X PRIZE Validation Protocol
TL;DR: A collective assembly of techniques designed to test the quality and accuracy of 100 whole human genome sequences resulting from the Archon Genomics X PRIZE (AGXP) competition is described in this paper.
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Isaac, the Illumina variant calling workflow
Liudmila Sergeevna Mainzer,Brad Chapman,Oliver Hofmann,Gloria Rendon,Zachary D. Stephens,Victor Jongeneel +5 more
TL;DR: iSAAC is an "ultra-fast" variant calling workflow, designed by Illumina, Inc, and is claimed to be six times faster than BWA-GATK, with comparable sensitivity and specificity, but this report focuses on the accuracy of variant calls.