Utpal J. Dave
Argonne National Laboratory
9 Papers
48 Citations
Utpal J. Dave is an academic researcher from Argonne National Laboratory. The author has contributed to research in topics: Data management & Workflow. The author has an hindex of 7, co-authored 9 publications. Previous affiliations of Utpal J. Dave include Toyota Technological Institute at Chicago & University of Chicago.
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Papers
The Globus Galaxies platform: delivering science gateways as a service
Ravi Madduri,Kyle Chard,Ryan Chard,Lukasz Lacinski,Alex Rodriguez,Dinanath Sulakhe,David Kelly,Utpal J. Dave,Ian Foster +8 more
TL;DR: A domain‐independent, cloud‐based science gateway platform, the Globus Galaxies platform, which overcomes this gap by providing a set of hosted services that directly address the needs of science gateway developers.
Lynx: a database and knowledge extraction engine for integrative medicine
Dinanath Sulakhe,Sandhya Balasubramanian,Bingqing Xie,Bo Feng,Andrew Taylor,Sheng Wang,Eduardo Berrocal,Utpal J. Dave,Jinbo Xu,Daniela Börnigen,T. Conrad Gilliam,Natalia Maltsev +11 more
TL;DR: Lynx is a web-based database and a knowledge extraction engine, supporting annotation and analysis of experimental data and generation of weighted hypotheses on molecular mechanisms contributing to human phenotypes and disorders of interest.
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A case study for cloud based high throughput analysis of NGS data using the globus genomics system
Krithika Bhuvaneshwar,Dinanath Sulakhe,Robinder Gauba,Alex Rodriguez,Ravi Madduri,Utpal J. Dave,Lukasz Lacinski,Ian Foster,Yuriy Gusev,Subha Madhavan +9 more
TL;DR: A case study of a practical solution that simplifies terabyte scale data handling and provides advanced tools for NGS data analysis using the Globus Genomics system, which is an enhanced Galaxy workflow system made available as a service.
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High-Throughput Translational Medicine: Challenges and Solutions
Dinanath Sulakhe,Sandhya Balasubramanian,Bingqing Xie,Bingqing Xie,Eduardo Berrocal,Eduardo Berrocal,Bo Feng,Bo Feng,Andrew Taylor,Bhadrachalam Chitturi,Utpal J. Dave,Gady Agam,Jinbo Xu,Daniela Börnigen,Daniela Börnigen,Inna Dubchak,T. Conrad Gilliam,T. Conrad Gilliam,Natalia Maltsev,Natalia Maltsev +19 more
TL;DR: A scalable computational platform based on crosscutting requirements from multiple scientific groups for data integration, management, and analysis is presented to support the end-to-end analytical needs of various translational projects.
13
Lynx web services for annotations and systems analysis of multi-gene disorders
Dinanath Sulakhe,Andrew Taylor,Sandhya Balasubramanian,Bo Feng,Bingqing Xie,Daniela Börnigen,Daniela Börnigen,Utpal J. Dave,Ian Foster,T. Conrad Gilliam,T. Conrad Gilliam,Natalia Maltsev,Natalia Maltsev +12 more
TL;DR: Lynx provides tools for gene list enrichment analysis using multiple functional annotations and network-based gene prioritization and access to the integrated database and the analytical tools built within the Lynx platform via REST based Web Services.