Thomas Desvignes
University of Oregon
70 Papers
84 Citations
Thomas Desvignes is an academic researcher from University of Oregon. The author has contributed to research in topics: Biology & Gene. The author has an hindex of 16, co-authored 54 publications. Previous affiliations of Thomas Desvignes include IFREMER & University of Provence.
Chat about Author
Papers
The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons
Ingo Braasch,Andrew R. Gehrke,J. Joshua Smith,Kazuhiko Kawasaki,Tereza Manousaki,Jeremy Pasquier,Angel Amores,Thomas Desvignes,Peter Batzel,Julian M. Catchen,Aaron M. Berlin,Michael S. Campbell,Daniel Barrell,Daniel Barrell,Kyle J. Martin,John F Mulley,Vydianathan Ravi,Alison P. Lee,Tetsuya Nakamura,Domitille Chalopin,Shaohua Fan,Dustin J. Wcisel,Cristian Cañestro,Jason Sydes,Felix E.G. Beaudry,Yi Sun,Jana Hertel,Michael J. Beam,Mario Fasold,Mikio Ishiyama,Jeremy Johnson,Steffi Kehr,Marcia Lara,John H. Letaw,Gary W. Litman,Ronda T. Litman,Masato Mikami,Tatsuya Ota,Nil Ratan Saha,Louise Williams,Peter F. Stadler,Han Wang,John S. Taylor,Quenton C. Fontenot,Allyse M. Ferrara,Stephen M. J. Searle,Bronwen Aken,Bronwen Aken,Mark Yandell,Igor Schneider,Jeffrey A. Yoder,Jean-Nicolas Volff,Axel Meyer,Chris T. Amemiya,Byrappa Venkatesh,Peter W. H. Holland,Yann Guiguen,Julien Bobe,Neil H. Shubin,Federica Di Palma,Jessica Alföldi,Kerstin Lindblad-Toh,Kerstin Lindblad-Toh,John H. Postlethwait +63 more
TL;DR: In this article, the authors sequenced the genome of spotted gar (Lepisosteus oculatus), whose lineage diverged from teleosts before teleost genome duplication (TGD).
miRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants
Thomas Desvignes,Peter Batzel,Eugene Berezikov,Karen Eilbeck,Janan T. Eppig,Monica S. McAndrews,Amy Singer,John H. Postlethwait +7 more
TL;DR: A revised definition of miRNAs is proposed to encompass the full complexity of sequence variations (i.e., isomiRs) in the analysis of small RNA sequencing experiments and nomenclature guidelines are reviewed.
186
Antarctic blackfin icefish genome reveals adaptations to extreme environments.
Bo Mi Kim,Angel Amores,Seunghyun Kang,Do Hwan Ahn,Jin-Hyoung Kim,Il Chan Kim,Jun Hyuck Lee,Sung Gu Lee,Hyoungseok Lee,Jung Eun Lee,Han Woo Kim,Thomas Desvignes,Peter Batzel,Jason Sydes,Tom A. Titus,Catherine Wilson,Julian M. Catchen,Wesley C. Warren,Manfred Schartl,Manfred Schartl,H. William Detrich,John H. Postlethwait,Hyun Soo Park +22 more
TL;DR: The genome of the Antarctic blackfin icefish shows expansion of genes involved in protection from damage caused by ice and high-oxygen concentrations, which reflects adaptation to extreme Antarctic environments.
Nme protein family evolutionary history, a vertebrate perspective.
TL;DR: The present study offers an evolutionary framework that will pave the way for future studies on vertebrates Nme proteins and provides a unified vertebrate Nme nomenclature that is consistent with the nomenClature in use in mammals.
A Hormone That Lost Its Receptor: Anti-Müllerian Hormone (AMH) in Zebrafish Gonad Development and Sex Determination.
Yi-Lin Yan,Peter Batzel,Tom A. Titus,Jason Sydes,Thomas Desvignes,Ruth Bremiller,Bruce W. Draper,John H. Postlethwait +7 more
TL;DR: The loss of amhr2 is associated with the breakpoint of a chromosome rearrangement shared among cyprinid fishes, showing that ancestral Amh functions included development of the gonadal soma in ovaries and testes and regulation of gamete proliferation and maturation.
61