Suhua Shi
Sun Yat-sen University
141 Papers
887 Citations
Suhua Shi is an academic researcher from Sun Yat-sen University. The author has contributed to research in topics: Population & Biology. The author has an hindex of 37, co-authored 131 publications.
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Papers
miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments
TL;DR: An integrated pipline for exploring the expressional and evolutionary dynamics of miRNAs across multiple species is presented, miREvo, an integrated software platform with a graphical user interface (GUI), to process deep-sequencing data of small RNAs and to analyze miRNA sequence and expression evolution based on the multiple-species whole genome alignments (WGAs).
Statistical Tests for Detecting Positive Selection by Utilizing High-Frequency Variants
TL;DR: Simulations indicate that D and H in combination can be most effective in detecting positive selection while being insensitive to other perturbations, and a joint test, referred to as the DH test, is proposed.
381
The accumulation of deleterious mutations in rice genomes: a hypothesis on the cost of domestication.
TL;DR: It is hypothesized that during domestication artificial selection increased the frequency of many deleterious mutations, and 'hitchhiking' has occurred in rice domestication.
243
Microbial communities evolve faster in extreme environments
Sheng-Jin Li,Zheng-Shuang Hua,Li-Nan Huang,Jie Li,Suhua Shi,Lin-Xing Chen,Jialiang Kuang,Jun Liu,Min Hu,Wen-Sheng Shu +9 more
TL;DR: The rERs of microbial communities are mainly shaped by environmental conditions, and the microbes inhabiting extreme habitats (acid mine drainage, saline lake and hot spring) evolve faster than those populating benign environments (surface ocean, fresh water and soil).
The origin, diversification and adaptation of a major mangrove clade (Rhizophoreae) revealed by whole-genome sequencing.
Shaohua Xu,Ziwen He,Zhang Zhang,Zixiao Guo,Wuxia Guo,Haomin Lyu,Jianfang Li,Ming Yang,Zhenglin Du,Yelin Huang,Renchao Zhou,Cairong Zhong,David E. Boufford,Manuel T. Lerdau,Chung-I Wu,Chung-I Wu,Chung-I Wu,Norman C. Duke,Suhua Shi +18 more
TL;DR: Mangrove genomes inform about their past evolutionary success as well as portend a possibly difficult future in a time of global climate change.