Stanley Gu
University of Washington
7 Papers
22 Citations
Stanley Gu is an academic researcher from University of Washington. The author has contributed to research in topics: Glioma & Python (programming language). The author has an hindex of 5, co-authored 7 publications.
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Papers
Tellurium: An extensible python-based modeling environment for systems and synthetic biology.
Kiri Choi,J. Kyle Medley,Matthias König,Kaylene C. Stocking,Lucian P. Smith,Stanley Gu,Herbert M. Sauro +6 more
TL;DR: Tellurium is a modular, cross-platform, and open-source simulation environment composed of multiple libraries, plugins, and specialized modules and methods that facilitates reproducibility of models in systems and synthetic biology.
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Tellurium notebooks—An environment for reproducible dynamical modeling in systems biology
J. Kyle Medley,Kiri Choi,Matthias König,Lucian P. Smith,Stanley Gu,Joseph L. Hellerstein,Stuart C. Sealfon,Herbert M. Sauro +7 more
TL;DR: Tellurium Notebook is a software system for model authoring, simulation, and teaching that facilitates building reproducible dynamical models and reusing models by providing a notebook environment which allows models, Python code, and narrative to be intermixed.
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Recent advances in biomedical simulations: a manifesto for model engineering.
TL;DR: This article explores how to improve the quality of biomedical simulations by developing simulation models using tools and practices employed in software engineering, referring to this direction as model engineering.
Modeling Diffusely Invading Brain Tumors An Individualized Approach to Quantifying Glioma Evolution and Response to Therapy
Russell C. Rockne,Ellsworth C. Alvord,Mindy D. Szeto,Stanley Gu,Gargi Chakraborty,Kristin R. Swanson +5 more
- 01 Jan 2008
TL;DR: The present mathematical model characterizes glioma growth and invasiveness in terms of only two dominant parameters: net rates of diffusion/motility and the extent of invasion.
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Tellurium Notebooks - An Environment for Dynamical Model Development, Reproducibility, and Reuse
J. Kyle Medley,Kiri Choi,Matthias König,Lucian P. Smith,Stanley Gu,Joseph L. Hellerstein,Stuart C. Sealfon,Herbert M. Sauro +7 more
TL;DR: Tellurium automates embedding human–readable representations of COMBINE archives in literate coding notebooks, bringing to systems biology this strategy central to other literate notebook systems such as Mathematica.
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