Sören Lukas Hellmann
University of Mainz
14 Papers
26 Citations
Sören Lukas Hellmann is an academic researcher from University of Mainz. The author has contributed to research in topics: Genome & Chironomus riparius. The author has an hindex of 5, co-authored 11 publications.
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Papers
A big data approach to metagenomics for all-food-sequencing.
Robin Kobus,José Manuel Abuín,José Manuel Abuín,André Müller,Sören Lukas Hellmann,Juan C. Pichel,Tomás F. Pena,Andreas Hildebrandt,Thomas Hankeln,Bertil Schmidt +9 more
TL;DR: An alignment-free k -mer based method for detection and quantification of species composition in food and other complex biological matters that can scale efficiently towards large-scale collections of complex eukaryotic and bacterial reference genomes.
A High-Quality Genome Assembly from Short and Long Reads for the Non-biting Midge Chironomus riparius (Diptera).
Hanno Schmidt,Sören Lukas Hellmann,Ann-Marie Waldvogel,Barbara Feldmeyer,Thomas Hankeln,Markus Pfenninger +5 more
TL;DR: A hybrid genome assembly from short and long sequence reads is presented that make C. riparius’ genome one of the most contiguous Dipteran genomes published, the first complete mitochondrial genome of the species, and the respective recombination rate among the first insect recombination rates at all.
The genome, transcriptome, and proteome of the fish parasite Pomphorhynchus laevis (Acanthocephala)
Katharina M Mauer,Sören Lukas Hellmann,Marco Groth,Andreas C. Fröbius,Hans Zischler,Thomas Hankeln,Holger Herlyn +6 more
TL;DR: The first draft of an acanthocephalan nuclear genome is presented, besides the mitochondrial one, using the fish parasite Pomphorhynchus laevis (Palaeacantho-cephala) as a model, and transcripts and protein sequences are found to be more derived in P. Laevis than in rotifers from Monogononta and Bdelloidea.
AFS: identification and quantification of species composition by metagenomic sequencing.
Yongchao Liu,Yongchao Liu,Fabian Ripp,Rene Koeppel,Hanno Schmidt,Sören Lukas Hellmann,Mathias Weber,Christopher Felix Krombholz,Bertil Schmidt,Thomas Hankeln +9 more
TL;DR: AFS, a software pipeline for quantification of species composition in food, uses metagenomic shotgun sequencing and sequence read counting to infer species proportions and is independent of the sequencing assay and library preparation protocol.
Genomics and transcriptomics of epizoic Seisonidea (Rotifera, syn. Syndermata) reveal strain formation and gradual gene loss with growing ties to the host.
Katharina M Mauer,Hanno Schmidt,Marco Dittrich,Andreas C. Fröbius,Sören Lukas Hellmann,Hans Zischler,Thomas Hankeln,Holger Herlyn +7 more
TL;DR: In this paper, the authors analyzed first drafts of the genome and transcriptome of the key taxon Seisonidea and found that a haploid nuclear genome of about 50 Mb represents the plesiomorphic state for Rotifera-Acanthocephala.