Shriya Raj
European Bioinformatics Institute
3 Papers
Shriya Raj is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Biology & Redundancy (engineering). The author has an hindex of 3, co-authored 3 publications.
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Papers
UniProt: the universal protein knowledgebase in 2021
Alex Bateman,Maria Jesus Martin,Sandra Orchard,Michele Magrane,Rahat Agivetova,Shadab Ahmad,Emanuele Alpi,Emily H Bowler-Barnett,Ramona Britto,Borisas Bursteinas,Hema Bye-A-Jee,Ray Coetzee,Austra Cukura,Alan Wilter Sousa da Silva,Paul Denny,Tunca Doğan,ThankGod Ebenezer,Jun Fan,Leyla Jael Garcia Castro,Penelope Garmiri,George Georghiou,Leonardo Gonzales,Emma Hatton-Ellis,Abdulrahman Hussein,Alexandr Ignatchenko,Giuseppe Insana,Rizwan Ishtiaq,Petteri Jokinen,Vishal Joshi,Dushyanth Jyothi,Antonia Lock,Rodrigo Lopez,Aurelien Luciani,Jie Luo,Yvonne Lussi,Alistair MacDougall,Fábio Madeira,Mahdi Mahmoudy,Manuela Menchi,Alok Mishra,Katie Moulang,Andrew Nightingale,Carla Susana Oliveira,Sangya Pundir,Guoying Qi,Shriya Raj,Daniel Rice,Milagros Rodriguez Lopez,Rabie Saidi,Joseph Sampson,Tony Sawford,Elena Speretta,Edward Turner,Nidhi Tyagi,Preethi Vasudev,Vladimir Volynkin,Kate Warner,Xavier Watkins,Rossana Zaru,Hermann Zellner,Alan Bridge,Sylvain Poux,Nicole Redaschi,Lucila Aimo,Ghislaine Argoud-Puy,Andrea H. Auchincloss,Kristian B. Axelsen,Parit Bansal,Delphine Baratin,Marie-Claude Blatter,Jerven Bolleman,Emmanuel Boutet,Lionel Breuza,Cristina Casals-Casas,Edouard de Castro,Kamal Chikh Echioukh,Elisabeth Coudert,Béatrice A. Cuche,M Doche,Dolnide Dornevil,Anne Estreicher,Maria Livia Famiglietti,Marc Feuermann,Elisabeth Gasteiger,Sebastien Gehant,Vivienne Baillie Gerritsen,Arnaud Gos,Nadine Gruaz-Gumowski,Ursula Hinz,Chantal Hulo,Nevila Hyka-Nouspikel,Florence Jungo,Guillaume Keller,Arnaud Kerhornou,Vicente Lara,Philippe Le Mercier,Damien Lieberherr,Thierry Lombardot,Xavier D. Martin,Patrick Masson,Anne Morgat,Teresa Batista Neto,Salvo Paesano,Ivo Pedruzzi,Sandrine Pilbout,Lucille Pourcel,Monica Pozzato,Manuela Pruess,Catherine Rivoire,Christian J. A. Sigrist,K Sonesson,Andre Stutz,Shyamala Sundaram,Michael Tognolli,Laure Verbregue,Cathy H. Wu,Cecilia N. Arighi,Leslie Arminski,Chuming Chen,Yongxing Chen,John S. Garavelli,Hongzhan Huang,Kati Laiho,Peter B. McGarvey,Darren A. Natale,Karen E. Ross,C. R. Vinayaka,Qinghua Wang,Yuqi Wang,Lai-Su L. Yeh,Jian Zhang,Patrick Ruch,Douglas Teodoro +132 more
TL;DR: The UniProtKB responded to the COVID-19 pandemic through expert curation of relevant entries that were rapidly made available to the research community through a dedicated portal and a credit-based publication submission interface was developed.
Pfam: The protein families database in 2021.
Jaina Mistry,Sara Chuguransky,Lowri Williams,Matloob Qureshi,Gustavo A. Salazar,Erik L. L. Sonnhammer,Silvio C. E. Tosatto,Lisanna Paladin,Shriya Raj,Lorna Richardson,Robert D. Finn,Alex Bateman +11 more
TL;DR: The Pfam database is a widely used resource for classifying protein sequences into families and domains and the reintroduced Pfam-B which provides an automatically generated supplement to Pfam and contains 136 730 novel clusters of sequences that are not yet matched by a Pfam family.
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The InterPro protein families and domains database: 20 years on.
Matthias Blum,Hsin-Yu Chang,Sara Chuguransky,Tiago Grego,Swaathi Kandasaamy,Alex L. Mitchell,Gift Nuka,Typhaine Paysan-Lafosse,Matloob Qureshi,Shriya Raj,Lorna Richardson,Gustavo A. Salazar,Lowri Williams,Peer Bork,Alan Bridge,Julian Gough,Daniel H. Haft,Ivica Letunic,Aron Marchler-Bauer,Huaiyu Mi,Darren A. Natale,Marco Necci,Christine A. Orengo,Arun Prasad Pandurangan,Catherine Rivoire,Christian J. A. Sigrist,Ian Sillitoe,Narmada Thanki,Paul Thomas,Silvio C. E. Tosatto,Cathy H. Wu,Alex Bateman,Robert D. Finn +32 more
TL;DR: The status of InterPro (version 81.0) in its 20th year of operation, and its associated software, is reported, including updates to database content, the release of a new website and REST API, and performance improvements in InterProScan.