Samuel Hoff
11 Papers
Samuel Hoff is an academic researcher. The author has contributed to research in topics: Bayesian inference & Chemistry. The author has co-authored 1 publications.
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Papers
PLUMED Tutorials: A collaborative, community-driven learning ecosystem.
Gareth A. Tribello,Massimiliano Bonomi,Giovanni Bussi,Carlo Camilloni,Blake I Armstrong,Andrea Arsiccio,Simone Aureli,Federico Ballabio,Mattia Bernetti,Luigi Bonati,Samuel G. H. Brookes,Z. F. Brotzakis,Riccardo Capelli,Michele Ceriotti,Kam-Tung Chan,Pilar Cossio,Siva Dasetty,Davide Donadio,Bernd Ensing,Andrew L. Ferguson,Guillaume Fraux,Julian D. Gale,F. L. Gervasio,Toni Giorgino,Nicholas S M Herringer,Glen M. Hocky,Samuel Hoff,Michele Invernizzi,Olivier Languin-Cattoen,Vanessa Leone,Vittorio Limongelli,Olga Lopez-Acevedo,Fabrizio Marinelli,Pedro Febrer Martinez,Matteo Masetti,S.K. Mehdi,Angelos Michaelides,Mhd Hussein Murtada,Michele Parrinello,Paolo Piaggi,Adriana Pietropaolo,Fabio Pietrucci,S. Pipolo,Claire Pritchard,Paolo Raiteri,Stefano Raniolo,Daniele Rapetti,Valerio Rizzi,Jakub Rydzewski,Matteo Salvalaglio,Christoph Schran,Aniruddha Seal,Armin Shayesteh Zadeh,Tom'as F. D. Silva,V. Spiwok,Guillaume Stirnemann,D. Sucerquia,Pratyush Tiwary,Omar Valsson,Michele Vendruscolo,Gregory A. Voth,Andrew D. White,Jiangbo Wu +62 more
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A Bayesian inference approach to determining structural ensembles using cryo-EM and molecular dynamics.
Samuel Hoff,Massimiliano Bonomi +1 more
TL;DR: EMMIVox as mentioned in this paper is a Bayesian inference approach to determine structural ensembles of biological entities by combining cryo-EM data with molecular dynamics (MD) simulations, which is able to automatically detect and downweigh noisy experimental data.
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Extracting conformational heterogeneity from 2D and 3D cryo-EM data
Samuel Hoff,Massimiliano Bonomi,James Fraser,Eric R. Greene +3 more
TL;DR: Researchers develop tools to extract conformational heterogeneity from cryo-EM data, enabling the determination of protein ensembles and structure-dynamic-function relationships, with applications in understanding complex biomolecules and their dynamics.
BPS2025 - Expanding the chemical space of ligands for virtual screening using cryo-EM structural ensembles
Samuel Hoff,Samiran Sen,Massimiliano Bonomi +2 more
Product-stabilized filamentation by human glutamine synthetase allosterically tunes metabolic activity
Eric R Greene,Richard Muniz,Hiroki Yamamura,Samuel Hoff,Priyanka Bajaj,D. J. Lee,Erin M. Thompson,Angelika M. Arada,Gyun Min Lee,M. Bonomi,Justin M. Kollman,James S. Fraser +11 more