6 Papers
Sam Holt is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: European Nucleotide Archive & Data sharing. The author has an hindex of 5, co-authored 6 publications.
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Papers
The European Nucleotide Archive in 2020.
Peter W. Harrison,Alisha Ahamed,Raheela Aslam,Blaise T. F. Alako,Josephine Burgin,Nicola Buso,Mélanie Courtot,Jun Fan,Dipayan Gupta,Muhammad Haseeb,Sam Holt,Talal Ibrahim,Eugene Ivanov,Suran Jayathilaka,Vishnukumar Balavenkataraman Kadhirvelu,Manish Kumar,Rodrigo Lopez,Simon Kay,Rasko Leinonen,Xin Liu,Colman O’Cathail,Amir Pakseresht,Youngmi Park,Stephane Pesant,Nadim Rahman,Jeena Rajan,Alexey Sokolov,Senthilnathan Vijayaraja,Zahra Waheed,Ahmad Zyoud,Tony Burdett,Guy Cochrane +31 more
TL;DR: The major developments to ENA services and content in 2020 are highlighted, focussing in particular on the recently released updated ENA browser, modernisation of the release process and the authors' data coordination collaborations with specific research communities.
The European Nucleotide Archive in 2019.
Clara Amid,Blaise T. F. Alako,Vishnukumar Balavenkataraman Kadhirvelu,Tony Burdett,Josephine Burgin,Jun Fan,Peter W. Harrison,Sam Holt,Abdulrahman Hussein,Eugene Ivanov,Suran Jayathilaka,Simon Kay,Thomas M. Keane,Rasko Leinonen,Xin Liu,Josué Martínez-Villacorta,Annalisa Milano,Amir Pakseresht,Nadim Rahman,Jeena Rajan,Kethi Reddy,Edward Richards,Dmitriy Smirnov,Alexey Sokolov,Senthilnathan Vijayaraja,Guy Cochrane +25 more
TL;DR: Making the world’s public sequencing datasets available to the scientific community, the ENA represents a globally comprehensive nucleotide sequence resource in 2019 and provides an insight into selected key areas of development.
The European Nucleotide Archive in 2021.
Carla Cummins,Alisha Ahamed,Raheela Aslam,Josephine Burgin,Rajkumar Devraj,Ossama Edbali,Dipayan Gupta,Peter W. Harrison,Muhammad Haseeb,Sam Holt,Talal Ibrahim,Eugene Ivanov,Suran Jayathilaka,Vishnukumar Balavenkataraman Kadhirvelu,Simon Kay,Manish Kumar,Ankur Lathi,Rasko Leinonen,Fábio Madeira,Nandana Madhusoodanan,Milena Mansurova,Colman O’Cathail,Matt Pearce,Stephane Pesant,Nadim Rahman,Jeena Rajan,Gabriele Rinck,Sandeep Selvakumar,Alexey Sokolov,Swati Suman,Ross Thorne,Prabhat Totoo,Senthilnathan Vijayaraja,Zahra Waheed,Ahmad Zyoud,Rodrigo Lopez,Tony Burdett,Guy Cochrane +37 more
TL;DR: The European Nucleotide Archive (ENA) as mentioned in this paper provides a collection of open nucleotide sequencing data, both for deposition of, and access to, open DNA sequencing data and for open scientific data.
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The COMPARE Data Hubs
Clara Amid,Nima Pakseresht,Nicole Silvester,Suran Jayathilaka,Ole Lund,Lukasz D. Dynovski,Bálint Ármin Pataki,Dávid Visontai,Matthew Cotten,Basil Britto Xavier,Blaise T. F. Alako,Ariane Belka,José Cisneros,George B. Haringhuizen,Peter W. Harrison,Dirk Höper,Sam Holt,Camilla Hundahl,Abdulrahman Hussein,Rolf Sommer Kaas,Surbhi Malhotra-Kumar,Rasko Leinonen,David F. Nieuwenhuijse,Nadim Rahman,Carolina dos S. Ribeiro,Jeffrey Edward Skiby,József Stéger,János M. Szalai-Gindl,Martin Christen Frølund Thomsen,István Csabai,Marion Koopmans,Frank Møller Aarestrup,Guy Cochrane +32 more
TL;DR: An informatics platform that includes workflows for structured data storage, managing and pre-publication sharing of pathogen sequencing data and its analysis interpretations with relevant stakeholders is described.
The COMPARE Data Hubs
Clara Amid,Nima Pakseresht,Nicole Silvester,Suran Jayathilaka,Ole Lund,Lukasz D. Dynovski,Bálint Ármin Pataki,Dávid Visontai,Basil Britto Xavier,Blaise T. F. Alako,Ariane Belka,José Cisneros,Matthew Cotten,George B. Haringhuizen,Peter W. Harrison,Dirk Höper,Sam Holt,Camilla Hundahl,Abdulrahman Hussein,Rolf Sommer Kaas,Xin Liu,Rasko Leinonen,Surbhi Malhotra-Kumar,David F. Nieuwenhuijse,Nadim Rahman,Carolina dos S. Ribeiro,Jeffrey Edward Skiby,Dennis Schmitz,József Stéger,János M. Szalai-Gindl,Martin Christen Frølund Thomsen,Simone M. Cacciò,István Csabai,Annelies Kroneman,Marion Koopmans,Frank Møller Aarestrup,Guy Cochrane +36 more
TL;DR: An informatics platform that includes workflows for structured data storage, managing and pre-publication sharing of pathogen sequencing data and its analysis interpretations with relevant stakeholders is described.