Summary � Although experiments show a positive association between vascular plant and arbuscular mycorrhizal fungal (AMF) species richness, evidence from natural ecosystems is scarce. Furthermore, there is little knowledge about how AMF richness varies with belowground plant richness and biomass. � We examined relationships among AMF richness, above- and belowground plant richness, and plant root and shoot biomass in a native North American grassland. Root-colonizing AMF richness and belowground plant richness were detected from the same bulk root samples by 454-sequencing of the AMF SSU rRNA and plant trnL genes. � In total we detected 63 AMF taxa. Plant richness was 1.5 times greater belowground than aboveground. AMF richness was significantly positively correlated with plant species richness, and more strongly with below- than aboveground plant richness. Belowground plant richness was positively correlated with belowground plant biomass and total plant biomass, whereas aboveground plant richness was positively correlated only with belowground plant biomass. By contrast, AMF richness was negatively correlated with belowground and total plant biomass.

https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.12765

Species richness of arbuscular mycorrhizal fungi: associations with grassland plant richness and biomass

Plants are known to influence belowground microbial community structure along their roots, but the impacts of plant species richness and plant functional group (FG) identity on microbial communities in the bulk soil are still not well understood. Here, we used 454-pyrosequencing to analyse the soil microbial community composition in a long-term biodiversity experiment at Jena, Germany. We examined responses of bacteria, fungi, archaea, and protists to plant species richness (communities varying from 1 to 60 sown species) and plant FG identity (grasses, legumes, small herbs, tall herbs) in bulk soil. We hypothesized that plant species richness and FG identity would alter microbial community composition and have a positive impact on microbial species richness. Plant species richness had a marginal positive effect on the richness of fungi, but we observed no such effect on bacteria, archaea and protists. Plant species richness also did not have a large impact on microbial community composition. Rather, abiotic soil properties partially explained the community composition of bacteria, fungi, arbuscular mycorrhizal fungi (AMF), archaea and protists. Plant FG richness did not impact microbial community composition; however, plant FG identity was more effective. Bacterial richness was highest in legume plots and lowest in small herb plots, and AMF and archaeal community composition in legume plant communities was distinct from that in communities composed of other plant FGs. We conclude that soil microbial community composition in bulk soil is influenced more by changes in plant FG composition and abiotic soil properties, than by changes in plant species richness per se.

/pdf/differential-responses-of-soil-bacteria-fungi-archaea-and-5cnqofzeqv.pdf

Differential responses of soil bacteria, fungi, archaea and protists to plant species richness and plant functional group identity.

Anthropogenic land use shapes the composition and phylogenetic structure of soil arbuscular mycorrhizal fungal communities

More than a decade ago, the Driver (arbuscular mycorrhizal fungal partners drive plant communities) and Passenger (AMF community dynamics follows changes in the host plant community) hypotheses were suggested to explain the mutual relationships of plant and AMF communities. We propose one more hypothesis: the Habitat hypothesis, which postulates that both plant and AMF communities follow changes in abiotic conditions. The null hypothesis for all three working hypotheses can be called the Independence hypothesis, which proposes that plant and AMF communities are unrelated. We investigate the assumptions of these hypotheses and the available evidence in support of them. We suggest that community dynamics during secondary succession, including those related to land-use changes, may be explained by the Driver hypothesis, while the dynamics of plant and AMF communities during primary succession may be explained by the Passenger hypothesis. Within-region co-variation of successionally stable plant and AMF communities may be explained by the Habitat hypothesis, while the Independence hypothesis may explain global patterns of plant and AMF communities. These suggestions are tentative, and more evidence from both descriptive and experimental studies is required to assess them. In particular, comparative information is needed about dispersal limitation of plant and AMF communities in dynamic landscapes.

Plant and arbuscular mycorrhizal fungal (AMF) communities – which drives which?

Data generated from next generation sequencing (NGS) will soon comprise the majority of information about arbuscular mycorrhizal fungal (AMF) communities. Although these approaches give deeper insight, analysing NGS data involves decisions that can significantly affect results and conclusions. This is particularly true for AMF community studies, because much remains to be known about their basic biology and genetics. During a workshop in 2013, representatives from seven research groups using NGS for AMF community ecology gathered to discuss common challenges and directions for future research. Our goal was to improve the quality and accessibility of NGS data for the AMF research community. Discussions spanned sampling design, sample preservation, sequencing, bioinformatics and data archiving. With concrete examples we demonstrated how different approaches can significantly alter analysis outcomes. Failure to consider the consequences of these decisions may compound bias introduced at each step along the workflow. The products of these discussions have been summarized in this paper in order to serve as a guide for any researcher undertaking NGS sequencing of AMF communities.

https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.13340

Navigating the labyrinth: a guide to sequence-based, community ecology of arbuscular mycorrhizal fungi

We analyzed arbuscular mycorrhizal fungal (AMF) communities in plant root samples from a natural forest ecosystem — a primeval forest in Jarvselja, Estonia. AMF small-subunit (SSU) ribosomal RNA ge...

Root-colonizing and soil-borne communities of arbuscular mycorrhizal fungi in a temperate forest understorey1

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Root-colonizing and soil-borne communities of arbuscular mycorrhizal fungi in a temperate forest understorey1