Formation of Local Structures in Protein Folding

Beer foam proteins, melanoidins, and carbohydrates were individually added to bottles of a solution consisting of a carbonated, ethanolic mixture containing iso-α-acids and the inorganic ion compos...

Independent role of beer proteins, melanoidins and polysaccharides in foam formation

http://digital.csic.es/bitstream/10261/54387/1/Jimenez.pdf

1H NMR and CD evidence of the folding of the isolated ribonuclease 50–61 fragment

The one-disulfide intermediates formed during the oxidative refolding of ribonuclease A (RNase A) have been characterized. This information is important for understanding the folding pathways of RNase A. The one-disulfide intermediates were blocked with 2-aminoethyl methanethiosulfonate, fractionated using ion-exchange chromatography, and digested with trypsin and chymotrypsin. The resulting peptide fragments were fractionated using reversed phase high-performance liquid chromatography, and identified using mass spectrometry. The relative population of each one-disulfide intermediate was determined from its disulfide bond concentration using a postcolumn disulfide detection system. A total of 24 out of 28 possible one-disulfide intermediates were found to be populated (greater than 0.3%) in the one-disulfide mixture. The population of one-disulfide intermediates displays a nonrandom distribution. All four native disulfide pairings have populations greater than those predicted by loop entropy calculations, suggesting the presence of enthalpic contributions stabilizing these species. The one-disulfide intermediate [65, 72], containing the disulfide bond between cysteines 65 and 72, comprises 40% of the entire one-disulfide population. The interactions that stabilize this intermediate may play an important role in the regeneration pathways of RNase A.

Nonrandom Distribution of the One-Disulfide Intermediates in the Regeneration of Ribonuclease A†

The reactions of singlet oxygen, 1O2, with large peptides have been described previously. It was found that even in these systems, which in their native form are generally not supposed to possess a stable structure in solution, the polypeptide does impede the access of 1O2 to the amino acids that react readily with 1O2. Here we describe the 1O2 reaction with two proteins of well-defined structure. The quenching of 1O2 by bovine pancreatic trypsin inhibitor (BPTI) and by ribonuclease A (RNase A) was compared to that of a solution at the same concentration as those of its constituent amino acids that react readily with 1O2. The proteins were studied in their native form, when partly denatured by splitting their S-S bonds and when fully denatured. It was found that while in the native form the quenching rate constant was seven times lower in BPTI (2.2 vs 15.2 x 10(7) M-1 s-1) and three times lower in RNase A (11.0 vs 32 x 10(7) M-1 s-1) than in a mixture of its constituent amino acid residues, it increased upon denaturation reaching in the fully denatured state the value of the corresponding amino acid mixture. More striking is the effect of the protein structure when comparing the fraction of the encounters between 1O2 and protein, which cause damage to the protein, as reflected in the decrease of its biological activity. This decrease is assumed to be due to the chemical (oxidative) reactions of 1O2 in the protein. In the exceptionally stable BPTI the fraction of such encounters was 0.05 and in RNase A it was 0.2, whereas for the amino acid tryptophan in solution, 0.7 of the collisions with 1O2 led to a chemical reaction.

Reactivity of singlet oxygen toward proteins: the effect of structure in basic pancreatic trypsin inhibitor and in ribonuclease A.

Peptide mapping of bovine pancreatic ribonuclease a by reverse-phase high-performance liquid chromatography. I: Application to the reduced and S-carboxymethylated protein

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Peptide mapping of bovine pancreatic ribonuclease a by reverse-phase high-performance liquid chromatography. I: Application to the reduced and S-carboxymethylated protein