Rasa Elmentaite
Wellcome Trust Sanger Institute
33 Papers
35 Citations
Rasa Elmentaite is an academic researcher from Wellcome Trust Sanger Institute. The author has contributed to research in topics: Biology & Immune system. The author has an hindex of 8, co-authored 16 publications.
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Papers
Cell2location maps fine-grained cell types in spatial transcriptomics
Vitalii Kleshchevnikov,Artem Shmatko,Emma Dann,Alexander Aivazidis,Hamish W King,Tong Li,Rasa Elmentaite,Artem Lomakin,Veronika R. Kedlian,Adam Gayoso,Mika Sarkin Jain,Jun Sung Park,Lauma Ramona,Elizabeth Tuck,Anna Arutyunyan,Roser Vento-Tormo,Moritz Gerstung,Louisa K. James,Oliver Stegle,Omer Ali Bayraktar +19 more
TL;DR: A Bayesian model that can resolve fine-grained cell types in spatial transcriptomic data and create comprehensive cellular maps of diverse tissues is presented, enabling the integration of single-cell and spatial transcriptomics with higher sensitivity and resolution than existing tools.
708
Cross-tissue immune cell analysis reveals tissue-specific features in humans
Cecilia Domínguez Conde,L. Jarvis,Dan Rainbow,Steven B. Wells,Tomás Gomes,S Howlett,Ondrej Suchanek,Krzysztof Polanski,H. King,Lira Mamanova,Ni Huang,Peter A. Szabo,Laura Richardson,Liam Bolt,Eirini S. Fasouli,K. Mahbubani,M. Julieta Del Prete,Liz Tuck,Nathan Richoz,Zewen K. Tuong,Lia S. Campos,Hani S Mousa,Edward Needham,Sophie Pritchard,T. Li,Rasa Elmentaite,J. Park,Esfandiar Rahmani,David K. Menon,O. Bayraktar,L. James,K. Meyer,Nir Yosef,Menna R. Clatworthy,Peter J. Sims,Donna L. Farber,Kourosh Saeb-Parsy,J. Jones,Sarah A. Teichmann +38 more
TL;DR: An immune cell atlas of human innate and adaptive immune cells across lymphoid, mucosal, and exocrine sites reveals tissue-specific compositions and features, and reveals insights into how the immune system adapts to function effectively in different organ contexts.
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Cells of the human intestinal tract mapped across space and time.
Rasa Elmentaite,Natsuhiko Kumasaka,Kenny Roberts,Aaron M. Fleming,Emma Dann,Hamish W King,Vitalii Kleshchevnikov,Monika Dabrowska,Sophie Pritchard,Liam Bolt,Sara F. Vieira,Lira Mamanova,Ni Huang,Francesca Perrone,Issac Goh Kai’En,Steven Lisgo,Matilda Katan,Steven Leonard,Thomas R. W. Oliver,Thomas R. W. Oliver,C. Elizabeth Hook,Komal Nayak,Lia S. Campos,Cecilia Domínguez Conde,Emily Stephenson,Justin Engelbert,Rachel A. Botting,Krzysztof Polanski,Stijn van Dongen,Minal Patel,Michael D Morgan,Michael D Morgan,John C. Marioni,John C. Marioni,John C. Marioni,Omer Ali Bayraktar,Kerstin B Meyer,Xiaoling He,Roger A. Barker,Holm H. Uhlig,Holm H. Uhlig,Krishnaa T. Mahbubani,Kourosh Saeb-Parsy,Matthias Zilbauer,Menna R. Clatworthy,Menna R. Clatworthy,Muzlifah Haniffa,Muzlifah Haniffa,Kylie R. James,Kylie R. James,Sarah A. Teichmann,Sarah A. Teichmann +51 more
TL;DR: The cellular landscape of the human intestinal tract is dynamic throughout life, developing in utero and changing in response to functional requirements and environmental exposures as discussed by the authors, using single-cell RNA sequencing and antigen receptor analysis of almost half a million cells from up to 5 anatomical regions of the developing and up to 11 distinct anatomical regions in the healthy human gut.
Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn's Disease.
Rasa Elmentaite,Alexander Ross,Kenny Roberts,Kylie R. James,Daniel Ortmann,Tomás Gomes,Komal Nayak,Liz Tuck,Sophie Pritchard,Omer Ali Bayraktar,Robert Heuschkel,Ludovic Vallier,Sarah A. Teichmann,Sarah A. Teichmann,Sarah A. Teichmann,Matthias Zilbauer +15 more
TL;DR: An in-depth single-cell map of the developing human intestine at 6–10 weeks post-conception is generated, revealing the transcriptional profile of cycling epithelial precursor cells; distinct from LGR5-expressing cells.
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Mapping the developing human immune system across organs
Chenqu Suo,Emma Dann,Issac Goh,Laura Jardine,Vitalii Kleshchevnikov,Jong-Eun Park,Rachel A. Botting,Emily Stephenson,Justin Engelbert,Zewen K. Tuong,Krzysztof Polanski,Nadav Yayon,Chuan Xu,Ondrej Suchanek,Rasa Elmentaite,Cecilia Conde,Peng He,Sophie Pritchard,Mohiuddin Miah,Corina Moldovan,Alexander S. Steemers,M. Julieta Del Prete,John C. Marioni,Menna R. Clatworthy,Muzlifah Haniffa,Sarah A. Teichmann +25 more
TL;DR: A comprehensive single-cell RNA sequencing atlas of human developing immune system is performed together with antigen-receptor sequencing and spatial transcriptomics to reconstruct the developing human immune system and identifies, characterised and functionally validated the properties of human prenatal B1 cells and the origin of unconventional T cells.
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