Qing Wei
Purdue University
8 Papers
21 Citations
Qing Wei is an academic researcher from Purdue University. The author has contributed to research in topics: Computer science & Protein function prediction. The author has an hindex of 5, co-authored 8 publications.
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Papers
NaviGO: interactive tool for visualization and functional similarity and coherence analysis with gene ontology
TL;DR: NaviGO is a web-based tool for interactive visualization, retrieval, and computation of functional similarity and associations of GO terms and genes and quantified with six different scores including protein-protein interaction and context based association scores the authors have developed in previous works.
The PFP and ESG protein function prediction methods in 2014: effect of database updates and ensemble approaches.
TL;DR: The second round of the Critical Assessment of Function Annotation (CAFA) experiment was held in 2013-2014 as discussed by the authors, which evaluated the performance of many computational (automated) function prediction (AFP) methods.
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IAS: Interaction Specific GO Term Associations for Predicting Protein-Protein Interaction Networks
TL;DR: A novel scoring method for predicting PPIs from Gene Ontology (GO) annotations of proteins, named the protein-protein Interaction Association Score (IAS), was developed and found to outperform existing GO term-based scoring methods.
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Using PFP and ESG Protein Function Prediction Web Servers.
TL;DR: Two webservers for function prediction methods, which effectively use distantly related sequences to improve function annotation coverage and accuracy are introduced: Protein Function Prediction (PFP) and Extended Similarity Group (ESG).
10
Protein 3D Structure and Electron Microscopy Map Retrieval Using 3D-SURFER2.0 and EM-SURFER.
Xusi Han,Qing Wei,Daisuke Kihara +2 more
TL;DR: 3D‐SURFER and EM‐SurFER are developed, which utilize 3D Zernike descriptors (3DZD) to conduct high‐throughput protein structure comparison, visualization, and analysis, and interpretation of the search results.
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