4 Papers
1 Citations
Qi Dai is an academic researcher from Zhejiang Sci-Tech University. The author has contributed to research in topics: Nanopore & Sequence assembly. The author has an hindex of 2, co-authored 4 publications.
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Papers
Efficient assembly of nanopore reads via highly accurate and intact error correction.
Ying Chen,Fan Nie,Shang-Qian Xie,Yingfeng Zheng,Qi Dai,Thomas Bray,Yao-Xin Wang,Jian-Feng Xing,Zhi-Jian Huang,Depeng Wang,Li-Juan He,Feng Luo,Jianxin Wang,Yizhi Liu,Yizhi Liu,Chuan-Le Xiao +15 more
TL;DR: NECAT as mentioned in this paper is an error correction and de novo assembly tool designed to overcome complex errors in nanopore reads, which uses an adaptive read selection and two-step progressive method to quickly correct the reads to high accuracy.
MASQC: Next Generation Sequencing Assists Third Generation Sequencing for Quality Control in N6-Methyladenine DNA Identification.
TL;DR: The proposed MASQC method, which can identify 6mA events without doing the whole genome amplification (WGA) sequencing, performs well in quality control of false positive 6mA identification for both eukaryotic and prokaryotic genomes.
RSQ: a statistical method for quantification of isoform-specific structurome using transcriptome-wide structural profiling data [preprint]
Yunfei Wang,Xiaopeng Zhu,Ming Sun,Yue Chen,Shikui Tu,B Bai,Min Chen,Qi Dai,Haoran Wang,Michael Q. Zhang,Zhenyu Xuan +10 more
TL;DR: An RNAStructurome quantification method (RSQ) is developed to statistically model the distribution of reads over both isoforms and RNA conformations, and thus provide accurate quantification of the isoform-specific structurome.
Fast and accurate assembly of Nanopore reads via progressive error correction and adaptive read selection
Ying Chen,Fan Nie,Shang-Qian Xie,Yingfeng Zheng,Thomas Bray,Qi Dai,Yao-Xin Wang,Zhi-Jian Huang,Depeng Wang,Li-Juan He,Feng Luo,Jianxin Wang,Yizhi Liu,Chuan-Le Xiao +13 more
TL;DR: NECAT, an error correction and de novo assembly tool designed to overcome complex errors in Nanopore reads, is developed and an adaptive read selection and two-step progressive method to quickly correct Nanobore reads to high accuracy is proposed.