Patrick Tran Van
University of Lausanne
6 Papers
8 Citations
Patrick Tran Van is an academic researcher from University of Lausanne. The author has contributed to research in topics: Asexuality & Supergene. The author has an hindex of 4, co-authored 6 publications. Previous affiliations of Patrick Tran Van include Swiss Institute of Bioinformatics.
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Papers
GenPipes: an open-source framework for distributed and scalable genomic analyses
Mathieu Bourgey,Rola Dali,Robert Eveleigh,Kuang Chung Chen,Louis Letourneau,Joel Fillon,Marc Michaud,Maxime Caron,Johanna Sandoval,Francois Lefebvre,Gary Leveque,Eloi Mercier,David Bujold,Pascale Marquis,Patrick Tran Van,David Anderson de Lima Morais,Julien Tremblay,Xiaojian Shao,Edouard Henrion,Emmanuel Gonzalez,Pierre-Olivier Quirion,B. Caron,Guillaume Bourque +22 more
TL;DR: GenPipes is a flexible Python-based framework that facilitates the development and deployment of multi-step workflows optimized for high-performance computing clusters and the cloud, and offers genomics researchers a simple method to analyze different types of data.
An Ancient and Eroded Social Supergene Is Widespread across Formica Ants
Alan Brelsford,Alan Brelsford,Jessica Purcell,Jessica Purcell,Amaury Avril,Patrick Tran Van,Junxia Zhang,Junxia Zhang,Timothée Brütsch,Liselotte Sundström,Heikki Helanterä,Michel Chapuisat +11 more
TL;DR: The discovery that a very small portion of this large and ancient supergene harbors conserved trans-species SNPs linked to colony social organization suggests that the ancestral haplotypes have been eroded by recombination, with selection preserving differentiation at one or a few genes generating alternative social organization.
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GenPipes: an open-source framework for distributed and scalable genomic analyses
Mathieu Bourgey,Rola Dali,Robert Eveleigh,Kuang Chung Chen,Louis Letourneau,Joel Fillon,Marc Michaud,Maxime Caron,Johanna Sandoval,Francois Lefebvre,Gary Leveque,Eloi Mercier,David Bujold,Pascale Marquis,Patrick Tran Van,David Anderson de Lima Morais,Julien Tremblay,Xiaojian Shao,Edouard Henrion,Emmanuel Gonzalez,Pierre-Olivier Quirion,B. Caron,Guillaume Bourque +22 more
TL;DR: GenPipes is a flexible Python-based framework that facilitates the development and deployment of multi-step workflows optimized for High Performance Computing clusters and the cloud, and offers genomic researchers a simple method to analyze different types of data.
19
First annotated draft genomes of nonmarine ostracods (Ostracoda, Crustacea) with different reproductive modes.
Patrick Tran Van,Yoann Anselmetti,Jens Bast,Zoé Dumas,Nicolas Galtier,Kamil S. Jaron,Koen Martens,Darren J. Parker,Marc Robinson-Rechavi,Tanja Schwander,Paul Simion,Isa Schön,Isa Schön +12 more
TL;DR: The first reference genomes for non-marine ostracods were successfully assembled and annotated using an Illumina-based sequencing technology, resulting in assemblies of similar sizes for the three species (335-382 Mb) and with scaffold numbers and their N50 (19-56 kb) in the same orders of magnitude as mentioned in this paper.
12
Haplotype divergence supports long-term asexuality in the oribatid mite Oppiella nova.
Alexander Brandt,Alexander Brandt,Patrick Tran Van,Christian Bluhm,Yoann Anselmetti,Zoé Dumas,Emeric Figuet,Clémentine M. Francois,Nicolas Galtier,Bastian Heimburger,Kamil S. Jaron,Kamil S. Jaron,Kamil S. Jaron,Marjorie Labédan,Mark Maraun,Darren J. Parker,Darren J. Parker,Marc Robinson-Rechavi,Marc Robinson-Rechavi,Ina Schaefer,Paul Simion,Stefan Scheu,Tanja Schwander,Jens Bast,Jens Bast +24 more
TL;DR: In this paper, the authors present genomic and transcriptomic data of three populations of the asexual oribatid mite species Oppiella nova and its sexual relative O. subpectinata.