Patrick J. Collins
Agilent Technologies
17 Papers
224 Citations
Patrick J. Collins is an academic researcher from Agilent Technologies. The author has contributed to research in topics: Gene chip analysis & Nucleic acid. The author has an hindex of 10, co-authored 17 publications.
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Papers
Evaluation of external RNA controls for the assessment of microarray performance
Weida Tong,Anne Bergstrom Lucas,Richard Shippy,Xiaohui Fan,Xiaohui Fan,Hong Fang,Huixiao Hong,Michael S. Orr,Tzu-Ming Chu,Xu Guo,Patrick J. Collins,Yongming Andrew Sun,Sue-Jane Wang,Wenjun Bao,Russell D. Wolfinger,Svetlana Shchegrova,Lei Guo,Janet A. Warrington,Leming Shi +18 more
TL;DR: The behavior of different ERC types was investigated, resulting in several important observations, such as the sample-dependent attributes of performance and the potential of using these control RNAs in a combinatorial fashion.
The Agilent in situ-synthesized microarray platform.
TL;DR: Current best methods for using Agilent microarrays are outlined, detailed instructions for the most recently developed techniques are provided, and solutions to common problems encountered with two‐color microarray applications are discussed.
105
Patent
Method and system for quantifying and removing spatial-intensity trends in microarray data
Jayati Ghosh,Bill J. Peck,Eric M. Leproust,Charles Troup,Glenda C. Delenstarr,Patrick J. Collins,John F. Corson,Paul K. Wolber,Xiangyang Zhou +8 more
- 02 Jun 2004
TL;DR: In this paper, a method and system for quantifying and correcting spatial-intensity trends for each channel of a microarray data set having one or more channels is presented, based on the selected set of features, a surface is used to determine the intensities for all features in each channel.
43
Patent
Buffer composition and method for hybridization of microarrays on adsorbed polymer siliceous surfaces
Nelson R. Holcomb,Patrick J. Collins,Karen W. Shannon,Steven M. Lefkowitz +3 more
- 05 Jul 2001
TL;DR: In this paper, a buffer composition, method and kit for hybridizing microarray of nucleic acids bound to an adsorbed polymer surface of a siliceous substrate provide an envelope of conditions to hybridize nucleic acid targets.
24
Patent
Methods designing multiple mRNA transcript nucleic acid probe sequences for use in nucleic acid arrays
Patrick J. Collins,Keith C. Butler,Peter G. Webb,Karen W. Shannon,Sandra L. Tang +4 more
- 22 Nov 2002
TL;DR: In this article, a method for identifying a sequence of a nucleic acid that is suitable for use as a surface immobilized probe for two or more mRNA transcripts encoded by the same gene is described.
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