Ofir Raz
Weizmann Institute of Science
21 Papers
40 Citations
Ofir Raz is an academic researcher from Weizmann Institute of Science. The author has contributed to research in topics: Genome & Biology. The author has an hindex of 6, co-authored 16 publications.
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Papers
Benchmarked approaches for reconstruction of in vitro cell lineages and in silico models of C. elegans and M. musculus developmental trees.
Wuming Gong,Alejandro A. Granados,Jingyuan Hu,Matthew G. Jones,Matthew G. Jones,Ofir Raz,Irepan Salvador-Martínez,Hanrui Zhang,Ke Huan K. Chow,Il Youp Kwak,Renata Retkute,Alidivinas Prusokas,Augustinas Prusokas,Alex Khodaverdian,Richard Zhang,Suhas Rao,Robert Y. Wang,Phil Rennert,Vangala G. Saipradeep,Naveen Sivadasan,Aditya Rao,Thomas Joseph,Rajgopal Srinivasan,Jiajie Peng,Lu Han,Xuequn Shang,Daniel J. Garry,Thomas Yu,Verena Chung,Michael Mason,Zhandong Liu,Yuanfang Guan,Nir Yosef,Jay Shendure,Maximilian J. Telford,Ehud Shapiro,Michael B. Elowitz,Pablo Meyer +37 more
TL;DR: The DREAM challenge as mentioned in this paper used in-vitro experimental intMEMOIR recordings and in-silico data for a C.elegans lineage tree and a Mus musculus tree of 10,000 cells.
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Comparison of seven single cell whole genome amplification commercial kits using targeted sequencing.
Tamir Biezuner,Ofir Raz,Shiran Amir,Lilach Milo,Rivka Adar,Yael Fried,Elena Ainbinder,Ehud Shapiro +7 more
TL;DR: In this article, the authors compared all commercially available scWGA kits and showed that no single kit is optimal across all categories, highlighting the need for a dedicated kit selection in accordance with experimental requirements.
Synthesis and cell-free cloning of DNA libraries using programmable microfluidics.
Tuval Ben Yehezkel,Arnaud Rival,Ofir Raz,Rafael Cohen,Zipora Marx,Miguel Cámara,Jean-Frédéric Dubern,Birgit Koch,Stephan Heeb,Natalio Krasnogor,Cyril Delattre,Ehud Shapiro +11 more
TL;DR: The first de novo synthesis and cell-free cloning of custom DNA libraries in sub-microliter reaction droplets using programmable digital microfluidics is reported.
Time-aligned hourglass gastrulation models in rabbit and mouse
Yoav Mayshar,Ofir Raz,Raz Ben-Yair,Ron Hadas,N. Reines,Markus Mittnenzweig,Oren Ben-Kiki,Aviezer Lifshitz,Amos Tanay,Yonatan Stelzer +9 more
TL;DR: In this article , the authors compare rabbit and mouse time-resolved differentiation trajectories to revisit the hourglass model at single-cell resolution and find convergence toward similar cell-state compositions at E7.5, supported by quantitatively conserved expression of 76 transcription factors.
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DNA-library assembly programmed by on-demand nano-liter droplets from a custom microfluidic chip.
Uwe Tangen,Gabriel Antonio S. Minero,Abhishek Sharma,Patrick Wagler,Rafael Cohen,Ofir Raz,Tzipy Marx,Tuval Ben-Yehezkel,John S. McCaskill +8 more
TL;DR: A proof of principle is established of the production of functional combinatorial mixtures at the nanoliter scale for one sequence per well DNA libraries, as well as the scalability of the results to larger DNA libraries.