Natalya Yutin
National Institutes of Health
82 Papers
390 Citations
Natalya Yutin is an academic researcher from National Institutes of Health. The author has contributed to research in topics: Genome & Giant Virus. The author has an hindex of 42, co-authored 72 publications. Previous affiliations of Natalya Yutin include Technion – Israel Institute of Technology.
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Papers
A genomic update on clostridial phylogeny: Gram-negative spore formers and other misplaced clostridia.
TL;DR: It is reaffirmed that 16S rRNA and ribosomal protein sequences are better indicators of evolutionary proximity than phenotypic traits, even such key ones as the structure of the cell envelope and Gram-staining pattern.
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Minimum information about an uncultivated virus genome (MIUVIG)
Simon Roux,Evelien M. Adriaenssens,Bas E. Dutilh,Eugene V. Koonin,Andrew M. Kropinski,Mart Krupovic,Jens H. Kuhn,Rob Lavigne,J. Rodney Brister,Arvind Varsani,Arvind Varsani,Clara Amid,Ramy K. Aziz,Seth R. Bordenstein,Peer Bork,Mya Breitbart,Guy Cochrane,Rebecca A. Daly,Christelle Desnues,Melissa B. Duhaime,Joanne B. Emerson,François Enault,Jed A. Fuhrman,Pascal Hingamp,Philip Hugenholtz,Bonnie L. Hurwitz,Natalia Ivanova,Jessica M. Labonté,Kyung Bum Lee,Rex R. Malmstrom,Manuel Martinez-Garcia,Ilene Karsch Mizrachi,Hiroyuki Ogata,David Paez-Espino,Marie-Agnès Petit,Catherine Putonti,Thomas Rattei,Alejandro Reyes,Francisco Rodriguez-Valera,Karyna Rosario,Lynn M. Schriml,Frederik Schulz,Grieg F. Steward,Matthew B. Sullivan,Shinichi Sunagawa,Curtis A. Suttle,Ben Temperton,Susannah G. Tringe,Rebecca Vega Thurber,Nicole S. Webster,Nicole S. Webster,Katrine Whiteson,Steven W. Wilhelm,K. Eric Wommack,Tanja Woyke,Kelly C. Wrighton,Pelin Yilmaz,Takashi Yoshida,Mark J. Young,Natalya Yutin,Lisa Zeigler Allen,Lisa Zeigler Allen,Nikos C. Kyrpides,Emiley A. Eloe-Fadrosh +63 more
TL;DR: The MIUViG (Minimum Information about an Uncultivated Virus Genome) as mentioned in this paper standard was developed within the Genomic Standards Consortium framework and includes virus origin, genome quality, genome annotation, taxonomic classification, biogeographic distribution and in silico host prediction.
Global Organization and Proposed Megataxonomy of the Virus World
Eugene V. Koonin,Valerian V. Dolja,Mart Krupovic,Arvind Varsani,Arvind Varsani,Yuri I. Wolf,Natalya Yutin,F. Murilo Zerbini,Jens H. Kuhn +8 more
TL;DR: Phylogenetic analyses of virus hallmark genes combined with analyses of gene-sharing networks show that replication modules of five BCs evolved from a common ancestor that encoded an RNA-directed RNA polymerase or a reverse transcriptase, and propose a comprehensive hierarchical taxonomy of viruses.
526
Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms
Mickaël Boyer,Natalya Yutin,Isabelle Pagnier,Lina Barrassi,Ghislain Fournous,Leon Espinosa,Catherine Robert,Saïd Azza,Siyang Sun,Michael G. Rossmann,Marie Suzan-Monti,Bernard La Scola,Eugene V. Koonin,Didier Raoult +13 more
TL;DR: It is proposed that amoebae are “melting pots” of microbial evolution where diverse forms emerge, including giant viruses with complex gene repertoires of various origins.
389
Abundance of type I toxin–antitoxin systems in bacteria: searches for new candidates and discovery of novel families
Elizabeth M. Fozo,Kira S. Makarova,Svetlana A. Shabalina,Natalya Yutin,Eugene V. Koonin,Gisela Storz +5 more
TL;DR: These searches substantially expanded the collection of predicted type I toxins, revealed homology of the Ldr and Fst toxins, and suggested that type I toxin–antitoxin loci are not spread by horizontal gene transfer.
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