Heterogeneous graphs (HGs) also known as heterogeneous information networks have become ubiquitous in real-world scenarios; therefore, HG embedding, which aims to learn representations in a lower-dimension space while preserving the heterogeneous structures and semantics for downstream tasks (e.g., node/graph classification, node clustering, link prediction), has drawn considerable attentions in recent years. In this survey, we perform a comprehensive review of the recent development on HG embedding methods and techniques. We first introduce the basic concepts of HG and discuss the unique challenges brought by the heterogeneity for HG embedding in comparison with homogeneous graph representation learning; and then we systemically survey and categorize the state-of-the-art HG embedding methods based on the information they used in the learning process to address the challenges posed by the HG heterogeneity. In particular, for each representative HG embedding method, we provide detailed introduction and further analyze its pros and cons; meanwhile, we also explore the transformativeness and applicability of different types of HG embedding methods in the real-world industrial environments for the first time. In addition, we further present several widely deployed systems that have demonstrated the success of HG embedding techniques in resolving real-world application problems with broader impacts. To facilitate future research and applications in this area, we also summarize the open-source code, existing graph learning platforms and benchmark datasets. Finally, we explore the additional issues and challenges of HG embedding and forecast the future research directions in this field.

A Survey on Heterogeneous Graph Embedding: Methods, Techniques, Applications and Sources

Since real-world objects and their interactions are often multi-modal and multi-typed, heterogeneous networks have been widely used as a more powerful, realistic, and generic superclass of traditional homogeneous networks (graphs). Meanwhile, representation learning ( <italic xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">a.k.a. embedding) has recently been intensively studied and shown effective for various network mining and analytical tasks. In this work, we aim to provide a unified framework to deeply summarize and evaluate existing research on heterogeneous network embedding (HNE), which includes but goes beyond a normal survey. Since there has already been a broad body of HNE algorithms, as the first contribution of this article, we provide a generic paradigm for the systematic categorization and analysis over the merits of various existing HNE algorithms. Moreover, existing HNE algorithms, though mostly claimed generic, are often evaluated on different datasets. Understandable due to the application favor of HNE, such indirect comparisons largely hinder the proper attribution of improved task performance towards effective data preprocessing and novel technical design, especially considering the various ways possible to construct a heterogeneous network from real-world application data. Therefore, as the second contribution, we create four benchmark datasets with various properties regarding scale, structure, attribute/label availability, and <italic xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">etc . from different sources, towards handy and fair evaluations of HNE algorithms. As the third contribution, we carefully refactor and amend the implementations and create friendly interfaces for 13 popular HNE algorithms, and provide all-around comparisons among them over multiple tasks and experimental settings. By putting all existing HNE algorithms under a unified framework, we aim to provide a universal reference and guideline for the understanding and development of HNE algorithms. Meanwhile, by open-sourcing all data and code, we envision to serve the community with an ready-to-use benchmark platform to test and compare the performance of existing and future HNE algorithms ( <uri xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">https://github.com/yangji9181/HNE</uri> ).

/pdf/heterogeneous-network-representation-learning-a-unified-17t8egpy.pdf

Heterogeneous Network Representation Learning: A Unified Framework With Survey and Benchmark

An increasing number of machine learning tasks require dealing with large graph datasets, which capture rich and complex relationship among potentially billions of elements. Graph Neural Network (GNN) becomes an effective way to address the graph learning problem by converting the graph data into a low dimensional space while keeping both the structural and property information to the maximum extent and constructing a neural network for training and referencing. However, it is challenging to provide an efficient graph storage and computation capabilities to facilitate GNN training and enable development of new GNN algorithms. In this paper, we present a comprehensive graph neural network system, namely AliGraph, which consists of distributed graph storage, optimized sampling operators and runtime to efficiently support not only existing popular GNNs but also a series of in-house developed ones for different scenarios. The system is currently deployed at Alibaba to support a variety of business scenarios, including product recommendation and personalized search at Alibaba's E-Commerce platform. By conducting extensive experiments on a real-world dataset with 492.90 million vertices, 6.82 billion edges and rich attributes, AliGraph performs an order of magnitude faster in terms of graph building (5 minutes vs hours reported from the state-of-the-art PowerGraph platform). At training, AliGraph runs 40%-50% faster with the novel caching strategy and demonstrates around 12 times speed up with the improved runtime. In addition, our in-house developed GNN models all showcase their statistically significant superiorities in terms of both effectiveness and efficiency (e.g., 4.12%--17.19% lift by F1 scores).

/pdf/aligraph-a-comprehensive-graph-neural-network-platform-13oyl2si6o.pdf

AliGraph: a comprehensive graph neural network platform

There has been a growing interest in the graph-streaming setting where a continuous stream of graph updates is mixed with graph queries. In principle, purely-functional trees are an ideal fit for this setting as they enable safe parallelism, lightweight snapshots, and strict serializability for queries. However, directly using them for graph processing leads to significant space overhead and poor cache locality. This paper presents C-trees, a compressed purely-functional search tree data structure that significantly improves on the space usage and locality of purely-functional trees. We design theoretically-efficient and practical algorithms for performing batch updates to C-trees, and also show that we can store massive dynamic real-world graphs using only a few bytes per edge, thereby achieving space usage close to that of the best static graph processing frameworks. To study the efficiency and applicability of our data structure, we designed Aspen, a graph-streaming framework that extends the interface of Ligra with operations for updating graphs. We show that Aspen is faster than two state-of-the-art graph-streaming systems, Stinger and LLAMA, while requiring less memory, and is competitive in performance with the state-of-the-art static graph frameworks, Galois, GAP, and Ligra+. With Aspen, we are able to efficiently process the largest publicly-available graph with over two hundred billion edges in the graph-streaming setting using a single commodity multicore server with 1TB of memory.

https://dl.acm.org/doi/pdf/10.1145/3314221.3314598

Low-latency graph streaming using compressed purely-functional trees

Graph is a well known data structure to represent the associated relationships in a variety of applications, e.g., data science and machine learning. Despite a wealth of existing efforts on developing graph processing systems for improving the performance and/or energy efficiency on traditional architectures, dedicated hardware solutions, also referred to as graph processing accelerators, are essential and emerging to provide the benefits significantly beyond what those pure software solutions can offer. In this paper, we conduct a systematical survey regarding the design and implementation of graph processing accelerators. Specifically, we review the relevant techniques in three core components toward a graph processing accelerator: preprocessing, parallel graph computation, and runtime scheduling. We also examine the benchmarks and results in existing studies for evaluating a graph processing accelerator. Interestingly, we find that there is not an absolute winner for all three aspects in graph acceleration due to the diverse characteristics of graph processing and the complexity of hardware configurations. We finally present and discuss several challenges in details, and further explore the opportunities for the future research.

pdf/a-survey-on-graph-processing-accelerators-challenges-and-1y5l56pwpv.pdf

A Survey on Graph Processing Accelerators: Challenges and Opportunities

Subgraph enumeration is important for many applications such as network motif discovery and community detection. Recent works utilize graphics processing units (GPUs) to parallelize subgraph enumeration, but they can only handle graphs that fit into the GPU memory. In this paper, we propose a new approach for GPU-accelerated subgraph enumeration that can efficiently scale to large graphs beyond the GPU memory. Our approach divides the graph into partitions, each of which fits into the GPU memory. The GPU processes one partition at a time and searches the matched subgraphs of a given pattern (i.e., instances) within the partition as in the small graph. The key challenge is on enumerating the instances across different partitions, because this search would enumerate considerably redundant subgraphs and cause the expensive data transfer cost via the PCI-e bus. Therefore, we propose a novel shared execution approach to eliminate the redundant subgraph searches and correctly generate all the instances across different partitions. The experimental evaluation shows that our approach can scale to large graphs and achieve significantly better performance than the existing single-machine solutions.

https://ink.library.smu.edu.sg/cgi/viewcontent.cgi?article=6964&context=sis_research

GPU-Accelerated Subgraph Enumeration on Partitioned Graphs

Personalized PageRank (PPR) is a well-known proximity measure in graphs. To meet the need for dynamic PPR maintenance, recent works have proposed a local update scheme to support incremental computation. Nevertheless, sequential execution of the scheme is still too slow for highspeed stream processing. Therefore, we are motivated to design a parallel approach for dynamic PPR computation. First, as updates always come in batches, we devise a batch processing method to reduce synchronization cost among every single update and enable more parallelism for iterative parallel execution. Our theoretical analysis shows that the parallel approach has the same asymptotic complexity as the sequential approach. Second, we devise novel optimization techniques to effectively reduce runtime overheads for parallel processes. Experimental evaluation shows that our parallel algorithm can achieve orders of magnitude speedups on GPUs and multi-core CPUs compared with the state-of-the-art sequential algorithm.

/pdf/parallel-personalized-pagerank-on-dynamic-graphs-b9wfoze2li.pdf

Parallel personalized pagerank on dynamic graphs

We study the important problem of user alignment in e-commerce: to predict whether two online user identities that access an e-commerce site from different devices belong to one real-world person. As input, we have a set of user activity logs from Taobao and some labeled user identity linkages. User activity logs can be modeled using a heterogeneous interaction graph (HIG), and subsequently the user alignment task can be formulated as a semi-supervised HIG embedding problem. HIG embedding is challenging for two reasons: its heterogeneous nature and the presence of edge features. To address the challenges, we propose a novel Heterogeneous Embedding Propagation (HEP) model. The core idea is to iteratively reconstruct a node's embedding from its heterogeneous neighbors in a weighted manner, and meanwhile propagate its embedding updates from reconstruction loss and/or classification loss to its neighbors. We conduct extensive experiments on large-scale datasets from Taobao, demonstrating that HEP significantly outperforms state-of-the-art baselines often by more than 10% in F-scores.

Heterogeneous Embedding Propagation for Large-Scale E-Commerce User Alignment

Graph processing on GPUs received much attention in the industry and the academia recently, as the hardware accelerator offers attractive potential for performance boost. However, the high-bandwidth device memory on GPUs has limited capacity that constrains the size of the graph to be loaded on chip. In this paper, we introduce GPU-based graph traversal on compressed graphs, so as to enable the processing of graphs having a larger size than the device memory. Designed towards GPU's SIMT architecture, we propose two novel parallel scheduling strategies Two-Phase Traversal and Task-Stealing to handle thread divergence and workload imbalance issues when decoding the compressed graph. We further optimize our solution against power-law graphs by proposing Warp-centric Decoding and Residual Segmentation to facilitate parallelism on processing skewed out-degree distribution. Extensive experiments show that with 2x-18x compression rate, our proposed GPU-based graph traversal on compressed graphs (GCGT) achieves competitive efficiency compared with the state-of-the-art graph traversal approaches on non-compressed graphs.

https://ink.library.smu.edu.sg/cgi/viewcontent.cgi?article=5622&context=sis_research

GPU-based Graph Traversal on Compressed Graphs

GPU's massive computing power offers unprecedented opportunities to enable large graph analysis. Existing studies proposed various preprocessing approaches that convert the input graphs into dedicated structures for GPU-based optimizations. However, these dedicated approaches incur significant preprocessing costs as well as weak programmability to build general graph applications. In this paper, we introduce SAGE, a self-adaptive graph traversal on GPUs, which is free from preprocessing and operates on ubiquitous graph representations directly. We propose Tiled Partitioning and Resident Tile Stealing to fully exploit the computing power of GPUs in a runtime and self-adaptive manner. We also propose Sampling-based Reordering to further optimize the memory efficiency of SAGE through a lightweight and effective node reordering technique on the fly. Extensive experiments demonstrate that SAGE can achieve superior graph traversal performance over existing approaches under different architectural scenarios, i.e., single-GPU, out-of-core, and multi-GPU.

https://dl.acm.org/doi/pdf/10.1145/3448016.3457279

Self-adaptive Graph Traversal on GPUs

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