Michael Nitzberg
Stanford University
8 Papers
187 Citations
Michael Nitzberg is an academic researcher from Stanford University. The author has contributed to research in topics: Microarray databases & Process ontology. The author has an hindex of 7, co-authored 8 publications.
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Papers
TB database: an integrated platform for tuberculosis research
T. B. K. Reddy,Robert Riley,Farrell Wymore,Phillip Montgomery,David DeCaprio,Reinhard Engels,Marcel Gellesch,Jeremy Hubble,Dennis Jen,Heng Jin,Michael Koehrsen,Lisa Larson,Maria Mao,Michael Nitzberg,Peter Sisk,Christian Stolte,Brian Weiner,Jared White,Zachariah K. Zachariah,Gavin Sherlock,James E. Galagan,Catherine A. Ball,Gary K. Schoolnik +22 more
TL;DR: The Tuberculosis Database (TBDB) is an integrated database providing access to TB genomic data and resources, relevant to the discovery and development of TB drugs, vaccines and biomarkers, and provides a unique discovery platform for TB research.
The Stanford Microarray Database accommodates additional microarray platforms and data formats.
Catherine A. Ball,Ihab A. B. Awad,Janos Demeter,Jeremy Gollub,Joan M. Hebert,Tina Hernandez-Boussard,Heng Jin,John C. Matese,Michael Nitzberg,Farrell Wymore,Zachariah K. Zachariah,Patrick O. Brown,Gavin Sherlock +12 more
TL;DR: Software is implemented that allows SMD to accept MAGE-ML documents from array manufacturers and to submit MIAME-compliant data in MAGES-ML format directly to ArrayExpress and GEO, greatly increasing the ease with which data from SMD can be published adhering to accepted standards and also increasing the accessibility of published microarray data to the general public.
The Stanford Microarray Database: implementation of new analysis tools and open source release of software
Janos Demeter,Catherine C Beauheim,Jeremy Gollub,Tina Hernandez-Boussard,Heng Jin,Donald Maier,John C. Matese,Michael Nitzberg,Farrell Wymore,Zachariah K. Zachariah,Patrick O. Brown,Gavin Sherlock,Catherine A. Ball +12 more
TL;DR: Several data analysis tools implemented in SMD are described and features of the software release are discussed, enabling other groups to create a local installation of SMD.
Implementation of GenePattern within the Stanford Microarray Database
Jeremy Hubble,Janos Demeter,Heng Jin,Maria Mao,Michael Nitzberg,T. B. K. Reddy,Farrell Wymore,Zachariah K. Zachariah,Gavin Sherlock,Catherine A. Ball +9 more
TL;DR: The GenePattern software package is incorporated directly into SMD, providing access to many new analysis tools, as well as a plug-in architecture that allows users to directly integrate and share additional tools through SMD.
OntologyWidget - a reusable, embeddable widget for easily locating ontology terms.
Catherine C Beauheim,Farrell Wymore,Michael Nitzberg,Zachariah K. Zachariah,Heng Jin,J. H. Pate Skene,Catherine A. Ball,Gavin Sherlock +7 more
TL;DR: OntologyWidget is an easy-to-use ontology search and display tool that can be used on any web page by creating a simple html description and provides a rapid auto-complete search function paired with an interactive tree display.