Michael D. Lee
Ames Research Center
47 Papers
66 Citations
Michael D. Lee is an academic researcher from Ames Research Center. The author has contributed to research in topics: Trichodesmium & Biology. The author has an hindex of 13, co-authored 40 publications. Previous affiliations of Michael D. Lee include University of Southern California.
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Papers
Community-led, integrated, reproducible multi-omics with anvi'o.
A. Murat Eren,Evan Kiefl,Alon Shaiber,Iva Veseli,Samuel E. Miller,Matthew S. Schechter,Isaac Fink,Jessica N. Pan,Mahmoud Yousef,Emily Fogarty,Florian Trigodet,Andrea R. Watson,Özcan C. Esen,Ryan M Moore,Quentin Clayssen,Michael D. Lee,Veronika Kivenson,Elaina D. Graham,Bryan D. Merrill,Antti Karkman,Daniel Blankenberg,Daniel Blankenberg,John M. Eppley,Andreas Sjödin,Jarrod J. Scott,Xabier Vázquez-Campos,Luke J. McKay,Elizabeth A. McDaniel,Sarah L. R. Stevens,Rika E. Anderson,Jessika Fuessel,Antonio Fernandez-Guerra,Lois Maignien,Lois Maignien,Tom O. Delmont,Amy D. Willis +35 more
TL;DR: The workflows designed to enable researchers to interpret data can constrain the biological questions that can be asked as discussed by the authors, but the workflows can also be difficult to adapt to real-world applications.
552
GToTree: a user-friendly workflow for phylogenomics.
TL;DR: GToTree is a command-line tool that can take any combination of fasta files, GenBank files and/or NCBI assembly accessions as input and outputs an alignment file, estimates of genome completeness and redundancy, and a phylogenomic tree based on a specified single-copy gene (SCG) set.
GToTree: a user-friendly workflow for phylogenomics
TL;DR: GToTree is a command-line tool that can take any combination of fasta files, GenBank files, and/or NCBI assembly accessions as input and outputs an alignment file, estimates of genome completeness and redundancy, and a phylogenomic tree based on the specified singlecopy gene (SCG) set.
257
Energy and carbon metabolisms in a deep terrestrial subsurface fluid microbial community
TL;DR: The terrestrial deep subsurface is a huge repository of microbial biomass, but in relation to its size and physical heterogeneity, few sites have been investigated in detail and a culture-independent metagenomic approach was applied to characterize the microbial community composition in deep terrestrial fluids.
Transient exposure to novel high temperatures reshapes coastal phytoplankton communities.
Joshua D. Kling,Michael D. Lee,Fei-Xue Fu,Megan D. Phan,Xinwei Wang,Xinwei Wang,Pingping Qu,David A. Hutchins +7 more
TL;DR: Coastal microbial communities are largely adapted to the current range of temperatures they experience, and a general hypothesis whereby multiyear upper temperature limits may represent thresholds, beyond which large community restructurings may occur is suggested.