Mark Mackiewicz
18 Papers
5 Citations
Mark Mackiewicz is an academic researcher. The author has contributed to research in topics: Genome & Biology. The author has an hindex of 6, co-authored 11 publications.
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Papers
Expanded encyclopaedias of DNA elements in the human and mouse genomes
Jill Moore,Michael J. Purcaro,Henry Pratt,Charles B. Epstein,Noam Shoresh,Jessika Adrian,Trupti Kawli,Carrie A. Davis,Alexander Dobin,Rajinder Kaul,Jessica Halow,Eric L. Van Nostrand,Peter Freese,David U. Gorkin,David U. Gorkin,Yin Shen,Yin Shen,Yupeng He,Mark Mackiewicz,Florencia Pauli-Behn,Brian A. Williams,Ali Mortazavi,Cheryl A. Keller,Xiao-Ou Zhang,Shaimae I. Elhajjajy,Jack Huey,Diane E. Dickel,Valentina Snetkova,Xintao Wei,Xiaofeng Wang,Xiaofeng Wang,Juan Carlos Rivera-Mulia,Juan Carlos Rivera-Mulia,Joel Rozowsky,Jing Zhang,Surya B. Chhetri,Jialing Zhang,Alec Victorsen,Kevin P. White,Axel Visel,Axel Visel,Gene W. Yeo,Christopher B. Burge,Eric Lécuyer,Eric Lécuyer,David M. Gilbert,Job Dekker,John L. Rinn,Eric M. Mendenhall,Joseph R. Ecker,Manolis Kellis,Manolis Kellis,Robert J. Klein,William Stafford Noble,Anshul Kundaje,Roderic Guigó,Peggy J. Farnham,J. Michael Cherry,Richard M. Myers,Bing Ren,Bing Ren,Brenton R. Graveley,Mark Gerstein,Len A. Pennacchio,Len A. Pennacchio,Michael Snyder,Bradley E. Bernstein,Barbara J. Wold,Ross C. Hardison,Thomas R. Gingeras,John A. Stamatoyannopoulos,Zhiping Weng,Zhiping Weng,Zhiping Weng +73 more
TL;DR: The authors summarize the data produced by phase III of the Encyclopedia of DNA Elements (ENCODE) project, a resource for better understanding of the human and mouse genomes, which have produced 5,992 new experimental datasets, including systematic determinations across mouse fetal development.
CETCh-seq: CRISPR epitope tagging ChIP-seq of DNA-binding proteins
Daniel Savic,E. Christopher Partridge,Kimberly M. Newberry,Sophia B. Smith,Sarah Meadows,Brian S. Roberts,Mark Mackiewicz,Eric M. Mendenhall,Richard M. Myers +8 more
TL;DR: This work used clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9-based genome editing technology to develop CRISPR epitope tagging ChIP-seq (CETCh-seq) of DNA-binding proteins, and assessed the feasibility and robustness of the technique.
Occupancy maps of 208 chromatin-associated proteins in one human cell type.
E. Christopher Partridge,Surya B. Chhetri,Surya B. Chhetri,Jeremy W. Prokop,Ryne C. Ramaker,Camden Jansen,Say-Tar Goh,Mark Mackiewicz,Kimberly M. Newberry,Laurel A. Brandsmeier,Sarah Meadows,C. Luke Messer,Andrew A. Hardigan,Candice J. Coppola,Emma C. Dean,Shan Jiang,Daniel Savic,Ali Mortazavi,Barbara J. Wold,Richard M. Myers,Eric M. Mendenhall +20 more
TL;DR: Data and analyses from chromatin immunoprecipitation followed by high-throughput sequencing (ChIP–seq) experiments using the human HepG2 cell line are presented, providing a comprehensive catalogue of the transcription factor landscape and gene regulatory networks in these cells.
The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models
Joel Rozowsky,Jorg Drenkow,Yucheng T. Yang,Gamze Gursoy,Timur R. Galeev,Beatrice Borsari,Charles B. Epstein,Kun Xiong,Jinrui Xu,Jiahao Gao,Kai Yu,Ana Berthel,Zhanlin Chen,Fabio C. P. Navarro,Jason Liu,Maxwell S Sun,James C. Wright,Justin Chang,Christopher J. F. Cameron,Noam Shoresh,Elizabeth Gaskell,Jessika Adrian,Sergey Aganezov,François Aguet,Gabriela Balderrama-Gutierrez,Samridhi Banskota,G. Corona,Sora Chee,Surya B. Chhetri,Gabriel Conte Cortez Martins,Cassidy Danyko,Carrie A. Davis,Daniel Farid,Nina Farrell,Idan Gabdank,Yoel Gofin,David U. Gorkin,Mengting Gu,Vivian C. Hecht,Benjamin C. Hitz,Robbyn Issner,Melanie Kirsche,Xiangmeng Kong,Bonita R Lam,Shantao Li,Bian Li,Tianxiao Li,Xiqi Li,Khine Lin,Ruibang Luo,Mark Mackiewicz,Jill Moore,Jonathan M. Mudge,Nicholas C Nelson,Chad Nusbaum,Ioann O. Popov,Henry Pratt,Yunjiang Qiu,Srividya Ramakrishnan,Joe Raymond,Leonidas Salichos,Alexandra Scavelli,Jacob Schreiber,Fritz J. Sedlazeck,Lei-Hoon See,Rachel M. Sherman,Xu Shi,Minyi Shi,Cricket A. Sloan,J. Seth Strattan,Zhenqi Tan,Forrest Y. Tanaka,Anna Vlasova,Jun Wang,Jonathan D. Werner,Brian A. Williams,Min Xu,Chengfei Yan,Lu Yu,Chris Zaleski,Jing Zhang,Kristin G. Ardlie,J. M. Cherry,Eric M. Mendenhall,William Noble,Zhiping Weng,Morgan E. Levine,Alexander Dobin,Barbara J. Wold,Ali Mortazavi,Bing Ren,Jesse Gillis,Richard M. Myers,Michael Snyder,Jyoti S. Choudhary,Aleksandar Milosavljević,Michael C. Schatz,Roderic Guigó,Bradley E. Bernstein,Thomas R. Gingeras,Mark Gerstein +100 more
TL;DR: The EN-TEx dataset as mentioned in this paper contains 1,635 open-access datasets from four donors (∼30 tissues × ∼15 assays) mapped to matched, diploid genomes with long read phasing and structural variants, instantiating a catalog of >1 million allele-specific loci.
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Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes
Jill Moore,Michael J. Purcaro,Henry Pratt,Charles B. Epstein,Noam Shoresh,Jessika Adrian,Trupti Kawli,Carrie A. Davis,Alexander Dobin,Rajinder Kaul,Jessica Halow,Eric L. Van Nostrand,Peter Freese,David U. Gorkin,Yin Shen,Yupeng He,Mark Mackiewicz,Florencia Pauli-Behn,Brian A. Williams,Ali Mortazavi,Cheryl A. Keller,Xiao-Ou Zhang,Shaimae I. Elhajjajy,Jack Huey,Diane E. Dickel,Valentina Snetkova,Xintao Wei,Xiao-feng Wang,Juan Carlos Rivera-Mulia,Joel Rozowsky,Jing Zhang,Surya B. Chhetri,Jialing Zhang,Alec Victorsen,Kevin P. White,Axel Visel,Gene W. Yeo,Christopher B. Burge,Eric Lécuyer,David M. Gilbert,Job Dekker,John L. Rinn,Eric M. Mendenhall,Joseph R. Ecker,Manolis Kellis,Robert J. Klein,William Stafford Noble,Anshul Kundaje,Roderic Guigó,Peggy J. Farnham,J. Michael Cherry,Richard M. Myers,Bing Ren,Brenton R. Graveley,Mark Gerstein,Len A. Pennacchio,Michael Snyder,Bradley E. Bernstein,Barbara J. Wold,Ross C. Hardison,Thomas R. Gingeras,John A. Stamatoyannopoulos,Zhiping Weng +62 more