Lenore Pipes
University of California, Berkeley
29 Papers
248 Citations
Lenore Pipes is an academic researcher from University of California, Berkeley. The author has contributed to research in topics: Biology & Phylogenetic tree. The author has an hindex of 13, co-authored 24 publications. Previous affiliations of Lenore Pipes include University of Virginia Health System & Cornell University.
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Papers
Anacapa Toolkit: An environmental DNA toolkit for processing multilocus metabarcode datasets
Emily E. Curd,Zachary Gold,Gaurav S. Kandlikar,Jesse Gomer,Max Ogden,Taylor O'Connell,Lenore Pipes,Teia M. Schweizer,Laura Rabichow,Meixi Lin,Baochen Shi,Paul H. Barber,Nathan J. B. Kraft,Robert K. Wayne,Rachel S. Meyer +14 more
TL;DR: The Anacapa Toolkit improves the functionality of eDNA and streamlines biodiversity assessment and management by generating metabarcode specific databases, processing multilocus data, retaining a larger proportion of sequencing reads and expanding non‐traditional eDNA targets.
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The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics
Lenore Pipes,Sheng Li,Marjan Bozinoski,Robert E. Palermo,Xinxia Peng,Philip D. Blood,Sara M. Kelly,Jeffrey M. Weiss,Jean Thierry-Mieg,Danielle Thierry-Mieg,Paul Zumbo,Ronghua Chen,Gary P. Schroth,Christopher E. Mason,Michael G. Katze +14 more
TL;DR: A large-scale RNA-Seq data and analysis infrastructure is described, the NHP reference transcriptome resource, which presently hosts data from 12 species of primates and is to be expanded to 15 species/subspecies spanning great apes, old world monkeys, new world monkeys and prosimians.
Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR)
Xinxia Peng,Jean Thierry-Mieg,Danielle Thierry-Mieg,Andrew Nishida,Lenore Pipes,Marjan Bozinoski,Matthew J. Thomas,Sara M. Kelly,Jeffrey M. Weiss,Muthuswamy Raveendran,Donna M. Muzny,Richard A. Gibbs,Jeffrey Rogers,Gary P. Schroth,Michael G. Katze,Christopher E. Mason +15 more
TL;DR: A major expansion of NHPRTR is described by adding 10.1 billion fragments of tissue-specific RNA-seq data, such that 88% of the reads align to human reference sequences, allowing the full list of expression abundance across all tissues for each species to be computed.
Synonymous mutations and the molecular evolution of SARS-CoV-2 origins
TL;DR: In this article, a detailed analysis of the synonymous divergence, which is less likely to be affected by selection than amino acid divergence, between human severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and related strains was performed.
Genomic responses to selection for tame/aggressive behaviors in the silver fox ( Vulpes vulpes ).
Xu Wang,Xu Wang,Lenore Pipes,Lyudmila N. Trut,Yury E. Herbeck,Anastasiya V. Vladimirova,R. G. Gulevich,Anastasiya V. Kharlamova,Jennifer L. Johnson,Gregory M. Acland,Anna V. Kukekova,Andrew G. Clark +11 more
TL;DR: Brain pathways that impact the function of both serotonergic and glutaminergic neurons were clearly modulated by selection, consistent with the roles of these neurons in learning and memory.
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