Kenneth Haug
European Bioinformatics Institute
35 Papers
217 Citations
Kenneth Haug is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Computer science & Metadata. The author has an hindex of 18, co-authored 35 publications. Previous affiliations of Kenneth Haug include Wellcome Trust Sanger Institute.
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Papers
MetaboLights: a resource evolving in response to the needs of its scientific community
Kenneth Haug,Keeva Cochrane,Venkata Chandrasekhar Nainala,Mark Williams,Jiakang Chang,Kalai Vanii Jayaseelan,Claire O'Donovan +6 more
TL;DR: The submission process was completely overhauled to enable MetaboLights to deliver a far more user-friendly submission process and to facilitate the growing demand for reproducibility and integration with other ‘omics.
MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data
Kenneth Haug,Reza M. Salek,Pablo Conesa,Janna Hastings,Paula de Matos,Mark L Rijnbeek,Tejasvi Mahendraker,Mark Williams,Steffen Neumann,Philippe Rocca-Serra,Eamonn Maguire,Alejandra Gonzalez-Beltran,Susanna-Assunta Sansone,Julian L. Griffin,Christoph Steinbeck +14 more
TL;DR: The MetaboLights repository, powered by the open source ISA framework, is cross-species and cross-technique and will cover metabolite structures and their reference spectra as well as their biological roles, locations, concentrations and raw data from metabolic experiments.
656
Toward interoperable bioscience data
Susanna-Assunta Sansone,Philippe Rocca-Serra,Dawn Field,Eamonn Maguire,Chris F. Taylor,Chris F. Taylor,Oliver Hofmann,Hong Fang,Steffen Neumann,Weida Tong,Linda A. Amaral-Zettler,Kimberly Begley,Kimberly Begley,Timothy F. Booth,Lydie Bougueleret,Gully A. P. C. Burns,Brad Chapman,Timothy Clark,Lee-Ann Coleman,Jay Copeland,Sudeshna Das,Antoine de Daruvar,Paula de Matos,Ian Dix,Scott C. Edmunds,Chris T. Evelo,Chris T. Evelo,Mark K. Forster,Pascale Gaudet,Pascale Gaudet,Jack A. Gilbert,Carole Goble,Julian L. Griffin,Julian L. Griffin,Daniel J. Jacob,Daniel J. Jacob,Jos C. S. Kleinjans,Lee Harland,Kenneth Haug,Henning Hermjakob,Shannan J. Ho Sui,Alain Laederach,Shaoguang Liang,Stephen Marshall,Annette McGrath,Emily Merrill,Dorothy Reilly,Magali Roux,Caroline E. Shamu,Catherine A. Shang,Christoph Steinbeck,Anne Trefethen,Bryn Williams-Jones,Katherine Wolstencroft,Ioannis Xenarios,Winston Hide +55 more
TL;DR: The prerequisites for data commoning are described and an established and growing ecosystem of solutions using the shared 'Investigation-Study-Assay' framework to support that vision are presented.
451
Chemical Entities of Biological Interest: an update
Paula de Matos,Rafael Alcántara,Adriano Dekker,Marcus Ennis,Janna Hastings,Kenneth Haug,Inmaculada Spiteri,Steve Turner,Christoph Steinbeck +8 more
TL;DR: New features in ChEBI since the last NAR report in 2007 are reported, including substructure and similarity searching, a submission tool for authoring of ChE BI datasets by the community and a 30-fold increase in the number of chemical structures stored in Ch EBI.
343
PhenoMeNal: processing and analysis of metabolomics data in the cloud
Kristian Peters,James Bradbury,Sven Bergmann,Sven Bergmann,Marco Capuccini,Marta Cascante,Pedro de Atauri,Timothy M. D. Ebbels,Carles Foguet,Robert C. Glen,Robert C. Glen,Alejandra Gonzalez-Beltran,Ulrich L. Günther,Evangelos Handakas,Thomas Hankemeier,Kenneth Haug,Stephanie Herman,Petr Holub,Massimiliano Izzo,Daniel J. Jacob,David Johnson,David Johnson,Fabien Jourdan,Namrata Kale,Ibrahim Karaman,Bita Khalili,Bita Khalili,Payam Emami Khoonsari,Kim Kultima,Samuel Lampa,Anders Larsson,Christian Ludwig,Pablo Moreno,Steffen Neumann,Jon Ander Novella,Claire O'Donovan,Jake T M Pearce,Alina Peluso,Marco Enrico Piras,Luca Pireddu,Michelle A.C. Reed,Philippe Rocca-Serra,Pierrick Roger,Antonio Rosato,Rico Rueedi,Rico Rueedi,Christoph Ruttkies,Noureddin Sadawi,Noureddin Sadawi,Reza M. Salek,Susanna-Assunta Sansone,Vitaly A. Selivanov,Ola Spjuth,Daniel Schober,Etienne A. Thévenot,Mattia Tomasoni,Mattia Tomasoni,Merlijn van Rijswijk,Michael van Vliet,Mark R. Viant,Ralf J. M. Weber,Gianluigi Zanetti,Christoph Steinbeck +62 more
TL;DR: PhenoMeNal is an advanced and complete solution to set up Infrastructure-as-a-Service (IaaS) that brings workflow-oriented, interoperable metabolomics data analysis platforms into the cloud and constitutes a keystone solution in cloud e-infrastructures available for metabolomics.