Jonathan Lim
University of British Columbia
7 Papers
6 Citations
Jonathan Lim is an academic researcher from University of British Columbia. The author has contributed to research in topics: Protein domain & Northern blot. The author has an hindex of 4, co-authored 7 publications.
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Papers
The Transcription Factor Encyclopedia
Dimas Yusuf,Stefanie L. Butland,Magdalena I. Swanson,Eugene Bolotin,Amy Ticoll,Warren A. Cheung,Xiao Yu Cindy Zhang,Christopher Td Dickman,Debra L. Fulton,Jonathan Lim,Jake Schnabl,Oscar H. P. Ramos,Mireille Vasseur-Cognet,Charles N. de Leeuw,Elizabeth M. Simpson,Gerhart U. Ryffel,Eric Lam,Ralf Kist,Miranda Sc Wilson,Raquel Marco-Ferreres,Jan J. Brosens,Leonardo Beccari,Paola Bovolenta,Bérénice A. Benayoun,Lara J. Monteiro,Helma Dc Schwenen,Lars Grøntved,Elizabeth D. Wederell,Susanne Mandrup,Reiner A. Veitia,Harini Chakravarthy,Pamela A. Hoodless,M. Michela Mancarelli,Bruce E. Torbett,Alison H. Banham,Sekhar P. Reddy,Rebecca L. Cullum,Michaela Liedtke,Mario P. Tschan,Michelle Vaz,Angie Rizzino,Mariastella Zannini,Seth Frietze,Peggy J. Farnham,Astrid Eijkelenboom,Philip J. Brown,David Laperrière,Dominique Leprince,Tiziana de Cristofaro,Kelly L. Prince,Marrit Putker,Luis del Peso,Gieri Camenisch,Roland H. Wenger,Michal Mikula,Marieke Rozendaal,Sylvie Mader,Jerzy Ostrowski,Simon J. Rhodes,Capucine Van Rechem,Gaylor Boulay,Sam W. Z. Olechnowicz,Mary B. Breslin,Michael S. Lan,Kyster K. Nanan,Michael Wegner,Juan Hou,Rachel D. Mullen,Stephanie C. Colvin,Peter J. Noy,Carol F. Webb,Matthew E. Witek,Scott Ferrell,Juliet M. Daniel,Jason Y. Park,Scott A. Waldman,Daniel J. Peet,Michael J. Taggart,Padma-Sheela Jayaraman,Julien J. Karrich,Bianca Blom,Farhad Vesuna,Henriette O'Geen,Yunfu Sun,Richard M. Gronostajski,Mark W. Woodcroft,Margaret R. Hough,Edwin Chen,Nicholas Europe-Finner,Magdalena Karolczak-Bayatti,Jarrod Bailey,Oliver Hankinson,Venu Raman,David P. LeBrun,Shyam Biswal,Christopher J. Harvey,Jason P. DeBruyne,John B. Hogenesch,Robert F. Hevner,Christophe Héligon,Xin M. Luo,Marissa Cathleen Blank,Kathleen J. Millen,David S. Sharlin,Douglas Forrest,Karin Dahlman-Wright,Chunyan Zhao,Yuriko Mishima,Satrajit Sinha,Rumela Chakrabarti,Elodie Portales-Casamar,Frances M. Sladek,Philip Bradley,Wyeth W. Wasserman +113 more
TL;DR: The Transcription Factor Encyclopedia (TFe), a new web-based compendium of mini review articles on transcription factors (TFs) that is founded on the principles of open access and collaboration, is presented.
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Ulysses - an application for the projection of molecular interactions across species
Danielle Kemmer,Danielle Kemmer,Yong Huang,Sohrab P. Shah,Jonathan Lim,Jochen Brumm,Macaire M.S. Yuen,John Ling,Tao Xu,Wyeth W. Wasserman,B. F. Francis Ouellette +10 more
TL;DR: Ulysses was designed to perform Interolog Analysis by the projection of model organism interaction data onto homologous human proteins, and thus serves as an accelerator for the analysis of uncharacterized human proteins.
NovelFam3000--uncharacterized human protein domains conserved across model organisms.
Danielle Kemmer,Raf M. Podowski,David J. Arenillas,Jonathan Lim,Emily Hodges,Peggy Roth,Erik L. L. Sonnhammer,Christer Höög,Wyeth W. Wasserman +8 more
TL;DR: A data centre was created to facilitate the analysis of the uncharacterized domain-containing proteins and consistent experimental results between multiple members of a domain family allow for inferences of the domain's functional role.
Exploring the Foundation of Genomics: A Northern Blot Reference set for the Comparative Analysis of Transcript Profiling Technologies
Danielle Kemmer,Margareta Faxén,Emily Hodges,Jonathan Lim,Elena Herzog,Elsebrit Ljungström,Anders Lundmark,Mary K. Olsen,Raf M. Podowski,Erik L. L. Sonnhammer,Peter Nilsson,Mark Reimers,Boris Lenhard,Steven L. Roberds,Claes Wahlestedt,Christer Höög,Pankaj K. Agarwal,Wyeth W. Wasserman +17 more
TL;DR: A database of published Northern results obtained with a standardized commercial multiple tissue blot is created and the utility of the dbMTN collection for technology comparison is demonstrated, and expression profiles for genes across a set of human tissues are generated using multiple profiling techniques.
PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation.
Elodie Portales-Casamar,Stefan Kirov,Stefan Kirov,Jonathan Lim,Stuart Lithwick,Magdalena I. Swanson,Amy Ticoll,Jay Snoddy,Jay Snoddy,Wyeth W. Wasserman +9 more
TL;DR: The Pleiades Promoter Project collection of brain-linked regulatory sequences is introduced to demonstrate the depth of annotation possible within PAZAR.