Jiri Hamberg
University of Helsinki
4 Papers
15 Citations
Jiri Hamberg is an academic researcher from University of Helsinki. The author has contributed to research in topics: Exome & Exome sequencing. The author has an hindex of 4, co-authored 4 publications.
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Papers
Comprehensive evaluation of coding region point mutations in microsatellite‐unstable colorectal cancer
Johanna Kondelin,Kari Salokas,Lilli Saarinen,Kristian Ovaska,Heli Rauanheimo,Roosa-Maria Plaketti,Jiri Hamberg,Xiaonan Liu,Leena Yadav,Alexandra E. Gylfe,Tatiana Cajuso,Ulrika A. Hänninen,Kimmo Palin,Heikki Ristolainen,Riku Katainen,Eevi Kaasinen,Tomas Tanskanen,Mervi Aavikko,Minna Taipale,Jussi Taipale,Laura Renkonen-Sinisalo,Anna Lepistö,Selja Koskensalo,Jan Böhm,Jukka-Pekka Mecklin,Jukka-Pekka Mecklin,Halit Ongen,Halit Ongen,Emmanouil T. Dermitzakis,Emmanouil T. Dermitzakis,Outi Kilpivaara,Pia Vahteristo,Mikko P. Turunen,Sampsa Hautaniemi,Sari Tuupanen,Auli Karhu,Niko Välimäki,Markku Varjosalo,Esa Pitkänen,Lauri A. Aaltonen +39 more
TL;DR: The MutSigCV ranking identified several well‐established MSI CRC driver genes and provided additional evidence for previously proposed CRC candidate genes as well as shortlisted genes that have to the authors' knowledge not been linked to CRC before.
Exome and immune cell score analyses reveal great variation within synchronous primary colorectal cancers
Ulrika A. Hänninen,Erkki-Ville Wirta,Riku Katainen,Tomas Tanskanen,Jiri Hamberg,Minna Taipale,Jan Böhm,Laura Renkonen-Sinisalo,Anna Lepistö,Linda M. Forsström,Esa Pitkänen,Esa Pitkänen,Kimmo Palin,Toni T. Seppälä,Netta Mäkinen,Jukka-Pekka Mecklin,Lauri A. Aaltonen +16 more
TL;DR: This study highlights the need to evaluate both tumours of a synchronous pair for optimised targeted therapy and shows major diversity within SCRCs.
Comprehensive Evaluation of Protein Coding Mononucleotide Microsatellites in Microsatellite-Unstable Colorectal Cancer.
Johanna Kondelin,Alexandra E. Gylfe,Sofie Lundgren,Tomas Tanskanen,Jiri Hamberg,Mervi Aavikko,Kimmo Palin,Heikki Ristolainen,Riku Katainen,Eevi Kaasinen,Minna Taipale,Jussi Taipale,Laura Renkonen-Sinisalo,Heikki Järvinen,Jan Böhm,Jukka-Pekka Mecklin,Pia Vahteristo,Sari Tuupanen,Lauri A. Aaltonen,Lauri A. Aaltonen,Esa Pitkänen +20 more
TL;DR: A statistical model for the somatic background indel mutation rate of microsatellites and estimated clonality of mutations determined the most likely MSI target genes to be the aminoadipate-semialdehyde dehydrogenase AASDH and the solute transporter SLC9A8.
Exome-wide somatic mutation characterization of small bowel adenocarcinoma.
Ulrika A. Hänninen,Riku Katainen,Tomas Tanskanen,Roosa-Maria Plaketti,Riku Laine,Jiri Hamberg,Ari Ristimäki,Eero Pukkala,Minna Taipale,Jukka-Pekka Mecklin,Linda M. Forsström,Esa Pitkänen,Kimmo Palin,Niko Välimäki,Netta Mäkinen,Lauri A. Aaltonen +15 more
TL;DR: The first large exome sequencing study on a population-based set of SBA samples from all three small bowel segments is conducted, providing potential therapeutic targets, and novel and more thorough insights into the genetic background of this tumor type.