Jeremy Schmutz
Lawrence Berkeley National Laboratory
359 Papers
3.8K Citations
Jeremy Schmutz is an academic researcher from Lawrence Berkeley National Laboratory. The author has contributed to research in topics: Biology & Genome. The author has an hindex of 95, co-authored 301 publications. Previous affiliations of Jeremy Schmutz include Joint Genome Institute & Stanford University.
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Papers
The genetic basis of divergent pigment patterns in juvenile threespine sticklebacks
Anna K. Greenwood,Felicity C. Jones,Yingguang Frank Chan,Shannon D. Brady,Devin Absher,Jane Grimwood,Jeremy Schmutz,Richard M. Myers,David M. Kingsley,Catherine L. Peichel +9 more
TL;DR: A difference in a periodic pigment pattern among juvenile threespine sticklebacks from different environments is identified, emphasizing that pigment patterns can also possess a more complex genetic architecture.
High-Density Single Nucleotide Polymorphism Linkage Maps of Lowland Switchgrass using Genotyping-by-Sequencing.
Jason D. Fiedler,Christina Lanzatella,Miki Okada,Jerry Jenkins,Jeremy Schmutz,Christian M. Tobias +5 more
TL;DR: High‐density single nucleotide polymorphism linkage maps are generated using a reduced‐representation sequencing approach by genotyping 231 F1 progeny of a cross between two parents of lowland ecotype from the cultivars Kanlow and Alamo to demonstrate high levels of collinearity and confidence in the validity of both resources.
Population genomics and climate adaptation of a C4 perennial grass, Panicum hallii (Poaceae).
Billie A. Gould,Billie A. Gould,Juan Diego Palacio-Mejía,Jerry Jenkins,Sujan Mamidi,Kerrie Barry,Jeremy Schmutz,Thomas E. Juenger,David B. Lowry,David B. Lowry +9 more
TL;DR: The drivers of differentiation in the perennial C4 grass Panicum hallii are discovered and climate associated loci identified here represent promising targets for future research in this and other perennial grasses.
A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation.
Colin T. Kelleher,Readman Chiu,Heesun Shin,Ian Bosdet,Martin Krzywinski,Chris Fjell,Jennifer Wilkin,Tongming Yin,Stephen P. DiFazio,Johar Ali,Jennifer Asano,Susanna Chan,Alison Cloutier,Noreen Girn,Stephen Leach,Darlene Lee,Carrie Mathewson,Teika Olson,Katie O’Connor,Anna-Liisa Prabhu,Duane E. Smailus,Jeffery M. Stott,Miranda Tsai,Natasja Wye,George S. Yang,Jun Zhuang,Robert A. Holt,Nicholas H. Putnam,Julia Vrebalov,James J. Giovannoni,Jane Grimwood,Jeremy Schmutz,Daniel S. Rokhsar,Steven J.M. Jones,Marco A. Marra,Gerald A. Tuskan,Jörg Bohlmann,Brian E. Ellis,Kermit Ritland,Carl J. Douglas,Jacqueline E. Schein +40 more
TL;DR: Targeted sequencing of BAC clones and genetic analysis in a small number of representative regions showed that these co-aligning contigs represent distinct haplotypes in the heterozygous individual sequenced, and revealed the nature of these haplotype sequence differences.
Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling
Ryan D. Morin,Elbert Chang,Anca Petrescu,Nancy Y. Liao,Malachi Griffith,Robert Kirkpatrick,Yaron S.N. Butterfield,Alice C. Young,Jeffrey L Stott,Sarah Barber,Ryan Babakaiff,Mark Dickson,Corey Matsuo,David H. W. Wong,George S. Yang,Duane E. Smailus,Keith Wetherby,Peggy N. Kwong,Jane Grimwood,Charles P. Brinkley,Mabel Brown-John,Natalie D. Reddix-Dugue,Michael Mayo,Jeremy Schmutz,Jaclyn Beland,Morgan Park,Susan Gibson,Teika Olson,Gerard G. Bouffard,Miranda Tsai,Ruth Featherstone,Steve Chand,Asim Sarosh Siddiqui,Wonhee Jang,Edward B. Lee,Steven L. Klein,Robert W. Blakesley,Barry R. Zeeberg,Sudarshan Narasimhan,John N. Weinstein,Christa Pennacchio,Richard M. Myers,Eric D. Green,Lukas Wagner,Daniela S. Gerhard,Marco A. Marra,Steven J.M. Jones,Robert A. Holt +47 more
TL;DR: It is found that the paralogs that have been lost since the tetraploidization event are enriched for several molecular functions, but have found no such enrichment in the extantParalogs.