Ignacio Eguinoa
Ghent University
12 Papers
13 Citations
Ignacio Eguinoa is an academic researcher from Ghent University. The author has contributed to research in topics: Computer science & Workflow. The author has an hindex of 2, co-authored 8 publications.
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Papers
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
Enis Afgan,Anton Nekrutenko,Björn Grüning,Daniel Blankenberg,Jeremy Goecks,Michael C. Schatz,Alexander E. Ostrovsky,Alexandru Mahmoud,Andrew Lonie,Anna Syme,Anne Fouilloux,Anthony Bretaudeau,Anup Kumar,Arthur C. Eschenlauer,Assunta D. Desanto,Aysam Guerler,Beatriz Serrano-Solano,Bérénice Batut,Bradley W. Langhorst,Bridget Carr,Bryan Raubenolt,Cameron J. Hyde,Catherine J. Bromhead,Christopher B. Barnett,Coline Royaux,Cristóbal L. García Gallardo,Daniel Fornika,Dannon Baker,Dave Bouvier,Dave Clements,David A. de Lima Morais,David Lopez Tabernero,Delphine Larivière,E. Nasr,Federico Zambelli,Florian Heyl,Fotis Psomopoulos,Frederik Coppens,Gareth Price,Gianmauro Cuccuru,Gildas Le Corguillé,Gregory Von Kuster,Gulsum Gudukbay,Helena Rasche,Hans-Rudolf Hotz,Ignacio Eguinoa,Igor V. Makunin,Isuru Ranawaka,James Taylor,Jayadev Joshi,Jennifer Hillman-Jackson,John Chilton,Kaivan Kamali,Keith Suderman,Krzysztof Poterlowicz,Yvan Le Bras,Lucille Lopez-Delisle,Luke Sargent,Madeline E. Bassetti,M. A. Tangaro,Marius van den Beek,Martin Čech,Matthias Bernt,Matthias Fahrner,Mehmet Tekman,Melanie Föll,Michael R. Crusoe,Miguel Angel Roncoroni,N. K. Kucher,Nathaniel Coraor,Nicholas Stoler,Nick Rhodes,Nicola Soranzo,Niko Pinter,Nuwan Goonasekera,Pablo Moreno,Pavankumar Videm,Petera Melanie,Pietro Mandreoli,Pratik D. Jagtap,Qiang Gu,Ralf J. M. Weber,Ross Lazarus,Ruben H.P. Vorderman,Saskia Hiltemann,Sergey Golitsynskiy,Shilpa Garg,Simon Bray,Simon Gladman,Simone Leo,Subina Mehta,Timothy J. Griffin,Vahid Jalili,Yves Vandenbrouck,Vi-Kwei Wen,Vijaykrishna Nagampalli,W. Bacon,W. L. De Koning,Wolf-Martin Maier,P. J. Briggs +99 more
TL;DR: Key Galaxy technical developments include an improved user interface for launching large-scale analyses with many files, interactive tools for exploratory data analysis, and a complete suite of machine learning tools.
No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics.
Dannon Baker,Marius van den Beek,Daniel Blankenberg,Dave Bouvier,John Chilton,Nate Coraor,Frederik Coppens,Ignacio Eguinoa,Simon Gladman,Björn Grüning,Nicholas Keener,Delphine Larivière,Andrew Lonie,Sergei L Kosakovsky Pond,Wolfgang Maier,Anton Nekrutenko,James Taylor,Steven Weaver +17 more
TL;DR: All SARS-CoV-2 genomic data available in the public domain so far are used to underscore the importance of access to raw data and demonstrate that existing community efforts in curation and deployment of biomedical software can reliably support rapid, reproducible research during global health crises.
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Ten simple rules for making a software tool workflow-ready
Paul Brack,Peter Crowther,Stian Soiland-Reyes,Stuart Owen,Douglas E. Lowe,Alan Williams,Quentin Groom,Mathias Dillen,Frederik Coppens,Björn Grüning,Ignacio Eguinoa,Philip Ewels,Carole Goble +12 more
TL;DR: This paper aims to demonstrate the efforts towards in-situ applicability of the EMMARM, as to provide real-time information about the response of the immune system to EMTs.
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Precursor Intensity-Based Label-Free Quantification Software Tools for Proteomic and Multi-Omic Analysis within the Galaxy Platform.
Subina Mehta,Caleb Easterly,Ray Sajulga,Robert J. Millikin,Andrea Argentini,Ignacio Eguinoa,Lennart Martens,Michael R. Shortreed,Lloyd M. Smith,Thomas McGowan,Praveen Kumar,James E. Johnson,Timothy J. Griffin,Pratik D. Jagtap +13 more
TL;DR: MoFF and FlashLFQ as discussed by the authors are two open-source label-free quantification tools for mass spectrometer-based peptide and protein quantification, respectively.
15
The Arabidopsis condensin CAP-D subunits arrange interphase chromatin
Celia Municio,Wojciech Antosz,Klaus D. Grasser,Etienne Kornobis,Michiel Van Bel,Ignacio Eguinoa,Frederik Coppens,Andrea Bräutigam,Inna Lermontova,Inna Lermontova,Astrid Bruckmann,Katarzyna Zelkowska,Andreas Houben,Veit Schubert +13 more
TL;DR: In this paper, the role of CAP-D3 in interphase chromatin organization and function was evaluated using cytogenetic and transcriptome analysis in cap-d3 T-DNA insertion mutants.
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