Greg Wray
Duke University
5 Papers
22 Citations
Greg Wray is an academic researcher from Duke University. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 5, co-authored 5 publications.
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Papers
Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears.
Shiping Liu,Eline D. Lorenzen,Matteo Fumagalli,Bo Li,Kelley Harris,Zijun Xiong,Long Zhou,Thorfinn Sand Korneliussen,Mehmet Somel,Courtney C. Babbitt,Greg Wray,Jianwen Li,Weiming He,Zhuo Wang,Wenjing Fu,Xueyan Xiang,Claire Morgan,Aoife Doherty,Mary J. O'Connell,James O. McInerney,Erik W. Born,Love Dalén,Rune Dietz,Ludovic Orlando,Christian Sonne,Guojie Zhang,Rasmus Nielsen,Eske Willerslev,Jun Wang +28 more
TL;DR: It is found that genes on the polar bear lineage have been under stronger positive selection than in brown bears; nine of the top 16 genes under strong positive selection are associated with cardiomyopathy and vascular disease, implying important reorganization of the cardiovascular system.
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High-coverage sequencing and annotated assemblies of the budgerigar genome
Ganeshkumar Ganapathy,Jason T. Howard,James M. Ward,Jianwen Li,Bo Li,Yingrui Li,Yingqi Xiong,Yong Zhang,Shiguo Zhou,David C. Schwartz,Michael C. Schatz,Robert Aboukhalil,Olivier Fedrigo,Lisa Bukovnik,Ty Wang,Greg Wray,Isabelle Rasolonjatovo,Roger Winer,James R. Knight,Sergey Koren,Wesley C. Warren,Guojie Zhang,Adam M. Phillippy,Erich D. Jarvis +23 more
TL;DR: Across several quality metrics, these budgerigar assemblies are comparable to or better than the chicken and zebra finch genome assemblies built from traditional Sanger sequencing reads, and are sufficient to analyze regions that are difficult to sequence and assemble.
•Journal Article
Research article - The genome of the sea urchin Strongylocentrotus purpuratus
Erica Sodergren,George M. Weinstock,Eric H. Davidson,Rossanah Cameron,R. A. Gibbs,Robert C. Angerer,Lynne M. Angerer,Maria Ina Arnone,Burgess,Robert D. Burke,James A. Coffman,Michael Dean,Elphick,Charles A. Ettensohn,Kathy R. Foltz,Amro Hamdoun,Richard O. Hynes,William H. Klein,William F. Marzluff,McClay,Robert L. Morris,Arcady Mushegian,Jonathan P. Rast,LC Smith,Michael C. Thorndyke,Victor D. Vacquier,Gary M. Wessel,Greg Wray,Lan Zhang,Christine G. Elsik,Olga Ermolaeva,Wratko Hlavina,Gretchen E. Hofmann,Paul Kitts,Melissa J. Landrum,Aaron J. Mackey,Donna Maglott,Georgia Panopoulou,Albert J. Poustka,Kim D. Pruitt,Sapojnikov,Xingzhi Song,Alexandre Souvorov,Solovyev,Zheng Wei,Charles A. Whittaker,Kim C. Worley,KJ Durbin,Yufeng Shen,Olivier Fedrigo,David A. Garfield,Ralph Haygood,Alexander E Primus,Rahul Satija,Tonya F. Severson,Manuel L. Gonzalez-Garay,Andrew R. Jackson,Aleksandar Milosavljevic,Mark Y. Tong,Christopher E. Killian,Brian T. Livingston,Fred H. Wilt,N Adams,Robert Bellé,Seth Carbonneau,Rocky Cheung,Patrick Cormier,Bertrand Cosson,Jenifer C. Croce,Antonio Fernandez-Guerra,Anne Marie Genevière,Manisha Goel,Hemant Kelkar,Julia Morales,Odile Mulner-Lorillon,Anthony J. Robertson,Jared V. Goldstone,Bryan J. Cole,David Epel,Bert Gold,Me Hahn,Meredith Howard-Ashby,Mark Scally,John J. Stegeman,EL Allgood,Jonah Cool,KM Judkins,SS McCafferty,AM Musante,Robert A. Obar,AP Rawson,Blair J. Rossetti,I. R. Gibbons,MP Hoffman,A Leone,Sorin Istrail,Stefan C. Materna,Manoj P. Samanta,Stolc,Waraporn Tongprasit,Qiang Tu,KF Bergeron,Bruce P. Brandhorst,James R.R. Whittle,Kevin Berney,David J. Bottjer,Cristina Calestani,Kevin J. Peterson,Elly Suk Hen Chow,QA Yuan,Eran Elhaik,Dan Graur,Justin T. Reese,Ian Bosdet,S Heesun,Marco A. Marra,Jacqueline E. Schein,Michele K. Anderson,Brockton,Katherine M. Buckley,Avis H. Cohen,Sebastian D. Fugmann,Taku Hibino,Mariano Loza-Coll,Audrey J. Majeske,Cynthia Messier,Sham V. Nair,Zeev Pancer,DP Terwilliger,Cavit Agca,Enrique Arboleda,Nansheng Chen,Allison M. Churcher,Finn Hallböök,Glen Humphrey,Mohammed M. Idris,Takae Kiyama,Shuguang Liang,Dan O Mellott,Xiuqian Mu,Greg Murray,Robert Piotr Olinski,Florian Raible,Matthew L. Rowe,John S. Taylor,Kristin Tessmar-Raible,D. Wang,Karen Wilson,Shunsuke Yaguchi,Terry Gaasterland,Blanca E. Galindo,Herath Jayantha Gunaratne,Celina E. Juliano,Masashi Kinukawa,Gary W. Moy,Anna T. Neill,Mamoru Nomura,Michael Raisch,Anna Reade,Michelle M. Roux,Jia L. Song,Yi-Hsien Su,Ian K. Townley,Ekaterina Voronina,Julian L. Wong,Gabriele Amore,Margherita Branno,Euan R. Brown,Cavalieri,Duboc,Louise Duloquin,Constantin N. Flytzanis,Christian Gache,François Lapraz,Thierry Lepage,Annamaria Locascio,Pedro Martinez,Giorgio Matassi,Matranga,Ryan C. Range,Francesca Rizzo,Eric Röttinger,K Wilson,Wendy S. Beane,Cynthia A. Bradham,Christine A. Byrum,Thomas D. Glenn,Sofia Hussain,Mariano A. Loza,Gerard Manning,Esther Miranda,R Thomason,Katherine D. Walton,A Wikramanayke,Charles A. Whittaker,Sy Wu,Ronghui Xu,CT Brown,Lili Chen,Rachel F. Gray,Pei Yun Lee,Jongmin Nam,Paola Oliveri,Joel Smith,Donna M. Muzny,Stephanie Bell,Joseph Chacko,Andy Cree,Stacey M. Curry,Clay Davis,Huyen Dinh,Shannon Dugan-Rocha,Fowler J,Rachel Gill,Cerissa Hamilton,Judith Hernandez,Sandra Hines,Jennifer Hume,LaRonda Jackson,A Jolivet,Christie Kovar,Sandra L. Lee,Lora Lewis,George Miner,Margaret Morgan,Lynne V. Nazareth,Geoffrey Okwuonu,David A. Parker,Ling Ling Pu,R Thom,Rita A. Wright +230 more
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The genome of the sea urchin Strongylocentrotus purpuratus.
Erica Sodergren,George M. Weinstock,Eric H. Davidson,R. Andrew Cameron,Richard A. Gibbs,Robert C. Angerer,Lynne M. Angerer,Maria Ina Arnone,David R. Burgess,Robert D. Burke,James A. Coffman,Michael Dean,Maurice R. Elphick,Charles A. Ettensohn,Kathy R. Foltz,Amro Hamdoun,Richard O. Hynes,William H. Klein,William F. Marzluff,David R. McClay,Robert L. Morris,Arcady Mushegian,Arcady Mushegian,Jonathan P. Rast,L. Courtney Smith,Michael C. Thorndyke,Victor D. Vacquier,Victor D. Vacquier,Gary M. Wessel,Greg Wray,Lan Zhang,Christine G. Elsik,Christine G. Elsik,Olga Ermolaeva,Wratko Hlavina,Gretchen E. Hofmann,Paul Kitts,Melissa J. Landrum,Melissa J. Landrum,Aaron J. Mackey,Aaron J. Mackey,Donna Maglott,Georgia Panopoulou,Albert J. Poustka,Kim D. Pruitt,Victor Sapojnikov,Xingzhi Song,Alexandre Souvorov,Victor V. Solovyev,Zheng Wei,Charles A. Whittaker,Kim C. Worley,K. James Durbin,Yufeng Shen,Olivier Fedrigo,David A. Garfield,Ralph Haygood,Alexander E Primus,Rahul Satija,Tonya F. Severson,Manuel L. Gonzalez-Garay,Andrew R. Jackson,Aleksandar Milosavljevic,Mark Y. Tong,Christopher E. Killian,Brian T. Livingston,Fred H. Wilt,Nikki Adams,Nikki Adams,Robert Bellé,Robert Bellé,Seth Carbonneau,Rocky Cheung,Patrick Cormier,Patrick Cormier,Bertrand Cosson,Bertrand Cosson,Jenifer C. Croce,Antonio Fernandez-Guerra,Antonio Fernandez-Guerra,Anne Marie Genevière,Anne Marie Genevière,Manisha Goel,Hemant Kelkar,Julia Morales,Julia Morales,Odile Mulner-Lorillon,Anthony J. Robertson,Jared V. Goldstone,Bryan J. Cole,David Epel,Bert Gold,Mark E. Hahn,Meredith Howard-Ashby,Mark Scally,John J. Stegeman,Erin L. Allgood,Jonah Cool,Kyle M. Judkins,Shawn S. McCafferty,Ashlan M. Musante,Robert A. Obar,Amanda P. Rawson,Blair J. Rossetti,I. R. Gibbons,Matthew P. Hoffman,Andrew Leone,Sorin Istrail,Stefan C. Materna,Manoj P. Samanta,Viktor Stolc,Waraporn Tongprasit,Qiang Tu,Karl Frederik Bergeron,Bruce P. Brandhorst,James R.R. Whittle,Kevin Berney,David J. Bottjer,Cristina Calestani,Kevin J. Peterson,Elly Suk Hen Chow,Qiu Autumn Yuan,Eran Elhaik,Dan Graur,Justin T. Reese,Ian Bosdet,Shin Heesun,Marco A. Marra,Jacqueline E. Schein,Michele K. Anderson,Virginia Brockton,Katherine M. Buckley,Avis H. Cohen,Sebastian D. Fugmann,Taku Hibino,Mariano Loza-Coll,Audrey J. Majeske,Cynthia Messier,Sham V. Nair,Zeev Pancer,David P. Terwilliger,Cavit Agca,Enrique Arboleda,Nansheng Chen,Allison M. Churcher,Finn Hallböök,Glen Humphrey,Mohammed M. Idris,Takae Kiyama,Shuguang Liang,Dan O Mellott,Xiuqian Mu,Greg Murray,Robert Piotr Olinski,Florian Raible,Matthew L. Rowe,John S. Taylor,Kristin Tessmar-Raible,D. Wang,Karen Wilson,Karen Wilson,Shunsuke Yaguchi,Terry Gaasterland,Blanca E. Galindo,Herath Jayantha Gunaratne,Celina E. Juliano,Masashi Kinukawa,Gary W. Moy,Anna T. Neill,Mamoru Nomura,Michael Raisch,Anna Reade,Michelle M. Roux,Jia L. Song,Yi-Hsien Su,Ian K. Townley,Ekaterina Voronina,Julian L. Wong,Gabriele Amore,Margherita Branno,Euan R. Brown,Vincenzo Cavalieri,Véronique Duboc,Louise Duloquin,Constantin N. Flytzanis,Constantin N. Flytzanis,Christian Gache,François Lapraz,Thierry Lepage,Annamaria Locascio,Pedro Martinez,Giorgio Matassi,Valeria Matranga,Ryan C. Range,Francesca Rizzo,Eric Röttinger,Karen Wilson,Wendy S. Beane,Cynthia A. Bradham,Christine A. Byrum,Christine A. Byrum,Thomas D. Glenn,Sofia Hussain,Mariano A. Loza,Gerard Manning,Esther Miranda,Rebecca Thomason,Rebecca Thomason,Katherine D. Walton,Athula Wikramanayke,Charles A. Whittaker,Shu-Yu Wu,Ronghui Xu,C. Titus Brown,Lili Chen,Rachel F. Gray,Pei Yun Lee,Jongmin Nam,Paola Oliveri,Joel Smith,Donna M. Muzny,Stephanie Bell,Joseph Chacko,Andrew Cree,Stacey M. Curry,Clay Davis,Huyen Dinh,Shannon Dugan-Rocha,Fowler J,Rachel Gill,Cerrissa Hamilton,Judith Hernandez,Sandra Hines,Jennifer Hume,La Ronda Jackson,Angela Jolivet,Christie Kovar,Sandra L. Lee,Lora Lewis,George Miner,Margaret Morgan,Lynne V. Nazareth,Geoffrey Okwuonu,David A. Parker,Ling Ling Pu,Rachel Thorn,Rita A. Wright +246 more
TL;DR: The sequence and analysis of the 814-megabase genome of the sea urchin Strongylocentrotus purpuratus is reported, a model for developmental and systems biology and yields insights into the evolution of deuterostomes.
Identifying gene expression from single cells to single genes.
TL;DR: Three approaches that are found important for interrogating transcriptional mechanisms in echinoderms are emphasized: single cell mRNA sequencing, nascent RNA detection and identification, and chromatin immunoprecipitation (ChIP).