Glenn Proctor
European Bioinformatics Institute
14 Papers
64 Citations
Glenn Proctor is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Ensembl & Genome browser. The author has an hindex of 11, co-authored 14 publications. Previous affiliations of Glenn Proctor include Wellcome Trust Sanger Institute & University of Cambridge.
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Papers
Ensembl BioMarts: a hub for data retrieval across taxonomic space
Rhoda Kinsella,Andreas Kähäri,Syed Haider,Jorge Zamora,Glenn Proctor,Giulietta Spudich,Jeff Almeida-King,Daniel M. Staines,Paul S. Derwent,Arnaud Kerhornou,Paul J. Kersey,Paul Flicek +11 more
TL;DR: This article aims to give a comprehensive overview of the Ensembl and Ensemble Genomes BioMarts as well as some useful examples and a description of current data content and future objectives.
Locus Reference Genomic sequences: an improved basis for describing human DNA variants
Raymond Dalgleish,Paul Flicek,Fiona Cunningham,Alex Astashyn,Raymond E. Tully,Glenn Proctor,Yuan Chen,William M. McLaren,Pontus Larsson,Brendan Vaughan,Christophe Béroud,Glen Dobson,Heikki Lehväslaiho,Peter E.M. Taschner,Johan T. den Dunnen,Andrew Devereau,Ewan Birney,Anthony J. Brookes,Donna Maglott +18 more
TL;DR: The Locus Reference Genomic (LRG) sequence format as discussed by the authors was designed for the specific purpose of gene variant reporting and is based on the successful National Center for Biotechnology Information (NCBI) RefSeqGene project.
Ensembl Core Software Resources: storage and programmatic access for DNA sequence and genome annotation
Magali Ruffier,Andreas Kähäri,Monika Komorowska,Stephen Keenan,Matthew R. Laird,Ian Longden,Glenn Proctor,Steve Searle,Daniel M. Staines,Kieron Taylor,Alessandro Vullo,Andrew D. Yates,Daniel R. Zerbino,Paul Flicek,Paul Flicek +14 more
TL;DR: The Ensembl software resources are a stable infrastructure to store, access and manipulate genome assemblies and their functional annotations and serves as a platform for other groups to generate and maintain their own tailored annotation.
Mouse Phenotype Database Integration Consortium: integration [corrected] of mouse phenome data resources.
John M. Hancock,Niels C. Adams,Vassilis Aidinis,Andrew Blake,Molly A. Bogue,Steve D.M. Brown,Elissa J. Chesler,Duncan Davidson,Christopher Duran,Janan T. Eppig,Valerie Gailus-Durner,Hilary Gates,Georgios V. Gkoutos,Simon Greenaway,Martin Hrabé de Angelis,George Kollias,Sophie Leblanc,Kirsty Lee,Christoph Lengger,Holger Maier,Ann-Marie Mallon,Hiroshi Masuya,David Melvin,Werner Müller,Helen Parkinson,Glenn Proctor,Eli Reuveni,Paul F. Schofield,Aadya Shukla,Cynthia L. Smith,Tetsuro Toyoda,Laurent Vasseur,Shigeharu Wakana,Alison Walling,Jacqui White,Joe Wood,M. Zouberakis +36 more
TL;DR: A process to develop standards for the description of phenotypes (using ontologies and file formats for thedescription of phenotyping protocols and phenotype data sets) is initiated and needs to be supported by the wider mouse genetics and phenotypes communities to succeed.
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Solutions for data integration in functional genomics: a critical assessment and case study
Damian Smedley,Morris A. Swertz,Katy Wolstencroft,Glenn Proctor,Michael Zouberakis,Jonathan Bard,John M. Hancock,Paul N Schofield +7 more
TL;DR: An automated approach involving an in silico experimental workflow tool, Taverna, is developed using web services, BioMart and MOLGENIS technologies for data retrieval, and focuses on the current impediments to adopting such an approach in a wider context, and strategies to overcome them.