F. Duarte-Martínez
9 Papers
F. Duarte-Martínez is an academic researcher. The author has contributed to research in topics: Medicine & Biology. The author has an hindex of 1, co-authored 1 publications.
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Papers
Whole genome sequencing of Shigella sonnei through PulseNet Latin America and Caribbean: advancing global surveillance of foodborne illnesses
Kate S. Baker,Kate S. Baker,Josefina Campos,Mariana Pichel,A. Della Gaspera,F. Duarte-Martínez,E. Campos-Chacón,H.M. Bolaños-Acuña,Caterina Guzmán-Verri,Alison E. Mather,Alison E. Mather,S. Diaz Velasco,M.L. Zamudio Rojas,Jessica L. Forbester,Thomas R. Connor,Karen H. Keddy,Anthony M. Smith,E.A. López de Delgado,G. Angiolillo,N. Cuaical,José M. García Fernández,C. Aguayo,M. Morales Aguilar,C. Valenzuela,A.J. Morales Medrano,A. Sirok,N. Weiler Gustafson,P.L. Diaz Guevara,Lucy Angeline Montaño,Enrique Perez,Nicholas R. Thomson,Nicholas R. Thomson +31 more
TL;DR: Latin America contains novel genetic diversity of S. sonnei that is relevant on a global scale and commonly exhibits multidrug resistance and Retrospective passive surveillance with WGS has utility for informing treatment, identifying regionally epidemic sublineages and providing a framework for interpretation of prospective, locally sequenced outbreaks.
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Clinical Profiles at the Time of Diagnosis of SARS-CoV-2 Infection in Costa Rica During the Pre-vaccination Period Using a Machine Learning Approach
Jose Arturo Molina-Mora,Alejandra Salazar Gonzalez,Sergio Jimenez-Morgan,E Cordero-Laurent,Hebleen Brenes,Claudio Soto-Garita,Jorge Sequeira-Soto,F. Duarte-Martínez +7 more
TL;DR: In this paper , the authors implemented a symptom-based clustering using machine learning to identify clusters or clinical profiles at the population level among 18,974 records of positive SARS-CoV-2 cases.
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Metagenomic pipeline for identifying co-infections among distinct SARS-CoV-2 variants of concern: study cases from Alpha to Omicron
Jose Arturo Molina-Mora,E Cordero-Laurent,Melany Calderón-Osorno,Edgar Chacón Ramírez,F. Duarte-Martínez +4 more
TL;DR: In this article , a metagenomic pipeline based on the inference of multiple fragments similar to Amplicon Sequence Variants (ASV-like) from sequencing data and a custom SARS-CoV-2 database was presented to identify the concomitant presence of divergent SARS CoV2 genomes, i.e., variants of concern (VOCs).
Overview of the SARS-CoV-2 genotypes circulating in Latin America during 2021
Jose Arturo Molina-Mora,Jhonnatan Reales-González,Erwin Camacho,F. Duarte-Martínez,Pablo Tsukayama,Claudio Soto-Garita,Hebleen Brenes,E Cordero-Laurent,Ândrea Kely Campos Ribeiro dos Santos,Cláudio Guedes Salgado,Caio Santos Silva,Jorge Estefano Santana de Souza,Gisele Lopes Nunes,Tatianne Negri,Amanda Ferreira Vidal,Renato R. M. Oliveira,Guilherme Oliveira,José Esteban Muñoz-Medina,Angel Gustavo Salas-Lais,Guadalupe Mireles-Rivera,Ezequiel Sosa,Adrian Turjanski,María Cecilia Monzani,Mauricio Carobene,Federico Remes Lenicov,Gustavo Schottlender,Darío Fernández Do Porto,Jan Kreuze,Luisa Sacristán,Marcela Guevara-Suarez,Marco Cristancho,Rebeca Campos-Sánchez,Alfredo Herrera-Estrella +32 more
TL;DR: The number of SARS-CoV-2 genomes available from the region was extended by sequencing and analyzing the viral genome from COVID-19 patients from seven countries and a total of 1534 genome sequences were generated, demonstrating the laboratory and bioinformatics capabilities for genomic surveillance of pathogens that have been developed locally.
Prevalence Estimation, Antimicrobial Susceptibility, and Serotyping of Salmonella enterica Recovered from New World Non-Human Primates (Platyrrhini), Feed, and Environmental Surfaces from Wildlife Centers in Costa Rica
Ernesto Rojas-Sánchez,Mauricio Jiménez-Soto,Elías Barquero-Calvo,F. Duarte-Martínez,Dixie F. Mollenkopf,Thomas E. Wittum,Lohendy Muñoz-Vargas +6 more
TL;DR: In this article , the authors estimate the prevalence and identify antibiotic susceptibility profiles and serotypes of non-typhoidal Salmonella enterica recovered from non-human primate feces, feed offered, and surfaces in wildlife centers in Costa Rica.