Dimitris Dimitropoulos
European Bioinformatics Institute
20 Papers
43 Citations
Dimitris Dimitropoulos is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Protein Data Bank & Protein Data Bank (RCSB PDB). The author has an hindex of 12, co-authored 20 publications. Previous affiliations of Dimitris Dimitropoulos include University of Montana & Rutgers University.
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Papers
The RCSB Protein Data Bank: redesigned web site and web services
Peter W. Rose,Bojan Beran,Chunxiao Bi,Wolfgang F. Bluhm,Dimitris Dimitropoulos,David S. Goodsell,Andreas Prlić,Martha Quesada,Gregory B. Quinn,John D. Westbrook,Jasmine Young,Benjamin T. Yukich,Christine Zardecki,Helen M. Berman,Philip E. Bourne +14 more
TL;DR: The next generation of the RCSB PDB web site, as described here, provides a rich resource for research and education and enables a range of new possibilities to analyze and understand structure data.
The RCSB Protein Data Bank: new resources for research and education
Peter W. Rose,Chunxiao Bi,Wolfgang F. Bluhm,Cole Christie,Dimitris Dimitropoulos,Shuchismita Dutta,Rachel Kramer Green,David S. Goodsell,Andreas Prlić,Martha Quesada,Gregory B. Quinn,Alexander G. Ramos,John D. Westbrook,Jasmine Young,Christine Zardecki,Helen M. Berman,Philip E. Bourne +16 more
TL;DR: Improved methods for simple and complex searches of PDB data, creating specialized access to chemical component data and providing domain-based structural alignments enable new opportunities for analyzing and understanding structure data.
E-MSD: an integrated data resource for bioinformatics
Adel Golovin,Thomas J. Oldfield,John Tate,S. Velankar,Geoffrey J. Barton,Harry Boutselakis,Dimitris Dimitropoulos,Joël Fillon,A. Hussain,John Ionides,Melford John,P. Keller,E. Krissinel,P. McNeil,Avi Naim,Richard H. Newman,Anne Pajon,J. Pineda,Abdelkrim Rachedi,J. Copeland,Andrey Sitnov,Siamak Sobhany,Antonio Suarez-Uruena,G. J. Swaminathan,Mohammed Tagari,Swen Tromm,Wim F. Vranken,Kim Henrick +27 more
TL;DR: The Macromolecular Structure Database (MSD) group has worked closely with the UniProt group at the EBI to clean up the taxonomy and sequence cross-reference information in the MSD and UniProt databases, and exchange of annotation information has enriched the structural information inThe MSD database with annotation from wider sequence-oriented resources.
OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive
Jasmine Young,John D. Westbrook,Zukang Feng,Raul Sala,Ezra Peisach,Thomas J. Oldfield,Sanchayita Sen,Aleksandras Gutmanas,David R. Armstrong,John M. Berrisford,Li Chen,Minyu Chen,Luigi Di Costanzo,Dimitris Dimitropoulos,Guanghua Gao,Sutapa Ghosh,Swanand Gore,Vladimir Guranovic,Pieter M. S. Hendrickx,Brian P. Hudson,Reiko Igarashi,Yasuyo Ikegawa,Naohiro Kobayashi,Catherine L. Lawson,Yu-He Liang,Steve Mading,Lora Mak,M. Saqib Mir,Abhik Mukhopadhyay,Ardan Patwardhan,Irina Persikova,Luana Rinaldi,Eduardo Sanz-García,Monica Sekharan,Chenghua Shao,G. Jawahar Swaminathan,Lihua Tan,Eldon L. Ulrich,Glen van Ginkel,Reiko Yamashita,Huanwang Yang,Marina Zhuravleva,Martha Quesada,Gerard J. Kleywegt,Helen M. Berman,John L. Markley,Haruki Nakamura,Sameer Velankar,Stephen K. Burley +48 more
TL;DR: The design, functional operation, and supporting infrastructure of the OneDep system are described, and initial performance assessments are provided.
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E-MSD: the European Bioinformatics Institute Macromolecular Structure Database.
Harry Boutselakis,Dimitris Dimitropoulos,Joël Fillon,Adel Golovin,Kim Henrick,A. Hussain,John Ionides,Melford John,P. Keller,E. Krissinel,P. McNeil,Avi Naim,Richard H. Newman,Thomas J. Oldfield,J. Pineda,Abdelkrim Rachedi,J. Copeland,Andrey Sitnov,Siamak Sobhany,Antonio Suarez-Uruena,G. Jawahar Swaminathan,Mohammed Tagari,John Tate,Swen Tromm,S. Velankar,Wim F. Vranken +25 more
TL;DR: The E-MSD macromolecular structure relational database is designed to be a single access point for protein and nucleic acid structures and related information, derived from Protein Data Bank entries.