Deng Wu
Harbin Medical University
15 Papers
42 Citations
Deng Wu is an academic researcher from Harbin Medical University. The author has contributed to research in topics: Biology & Medicine. The author has an hindex of 7, co-authored 10 publications.
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Papers
ViRBase: a resource for virus–host ncRNA-associated interactions
Yanhui Li,Changliang Wang,Zhengqiang Miao,Xiaoman Bi,Deng Wu,Nana Jin,Liqiang Wang,Hao Wu,Kun Qian,Chunhua Li,Ting Zhang,Chunrui Zhang,Ying Yi,Hongyan Lai,Yongfei Hu,Lixin Cheng,Kwong-Sak Leung,Xiaobo Li,Fengmin Zhang,Kongning Li,Xia Li,Dong Wang +21 more
TL;DR: The current version of ViRBase documents more than 12 000 viral and cellular ncRNA-associated virus–virus, virus–host, host-virus and host–host interactions involving more than 460 non-redundant ncRNAs and 4400 protein-coding genes from between more than 60 viruses and 20 hosts.
ncRDeathDB: A comprehensive bioinformatics resource for deciphering network organization of the ncRNA-mediated cell death system.
Deng Wu,Yan Huang,Juanjuan Kang,Kongning Li,Xiaoman Bi,Ting Zhang,Nana Jin,Yongfei Hu,Puwen Tan,Lu Zhang,Ying Yi,Wenjun Shen,Jian Huang,Xiaobo Li,Xia Li,Jianzhen Xu,Dong Wang +16 more
TL;DR: The comprehensive bioinformatics resource (ncRDeathDB, www.rna-society.org/ncrdeathdb) is developed to archive ncRNA-associated cell death interactions and will help to visualize and navigate current knowledge of the noncoding RNA component of cell death and autophagy, to uncover the generic organizing principles of nc RNA- associated cell death systems, and to generate valuable biological hypotheses.
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RAID: a comprehensive resource for human RNA-associated (RNA–RNA/RNA–protein) interaction
Xiaomeng Zhang,Deng Wu,Liqun Chen,Xiang Li,Jinxurong Yang,Dandan Fan,Tingting Dong,Mingyue Liu,Puwen Tan,Jintian Xu,Ying Yi,Yuting Wang,Hua Zou,Yongfei Hu,Kaili Fan,Juanjuan Kang,Yan Huang,Zhengqiang Miao,Miaoman Bi,Nana Jin,Kongning Li,Xia Li,Jianzhen Xu,Dong Wang +23 more
TL;DR: This version of RAID contains more than 6100 RNA-associated interactions obtained by manually reviewing more than 2100 published papers, including 4493 RNA-RNA interactions and 1619 RNA-protein interactions.
Network-based survival-associated module biomarker and its crosstalk with cell death genes in ovarian cancer
Nana Jin,Hao Wu,Zhengqiang Miao,Yan Huang,Yongfei Hu,Xiaoman Bi,Deng Wu,Kun Qian,Liqiang Wang,Changliang Wang,Hongwei Wang,Kongning Li,Xia Li,Dong Wang +13 more
TL;DR: A network-based survival-associated approach is adopted to capture a 12-gene network module based on differential co-expression PPI network in the advanced-stage, high-grade ovarian serous cystadenocarcinoma, finding regulatory genes direct interacting with the module were found to be significantly overlapped with cell death genes.
SynBioLGDB: a resource for experimentally validated logic gates in synthetic biology
Liqiang Wang,Kun Qian,Yan Huang,Nana Jin,Hongyan Lai,Ting Zhang,Chunhua Li,Chunrui Zhang,Xiaoman Bi,Deng Wu,Changliang Wang,Hao Wu,Puwen Tan,Jianping Lu,Liqun Chen,Kongning Li,Xia Li,Dong Wang +17 more
TL;DR: The current version of SynBioLGDB documents more than 189 genetic logic gates with experimental evidence involving 80 AND gates and 16 NOR gates, etc. in three species.