Dawn Muddyman
University of Oxford
10 Papers
Dawn Muddyman is an academic researcher from University of Oxford. The author has contributed to research in topics: Medicine & Whole genome sequencing. The author has an hindex of 4, co-authored 10 publications.
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Papers
Whole-genome sequencing as part of national and international surveillance programmes for antimicrobial resistance: A roadmap
C. Vegyari,Anthony Underwood,Mihir Kekre,Silvia Argimon,Dawn Muddyman,Monica Abrudan,Celia C. Carlos,Pilar Donado-Godoy,Iruka N. Okeke,K L Ravikumar,Khalil Abudahab,Ayorinde O Afolayan,Alejandra Arevalo,J. Bernal-Morales,Erik C D Osma Castro,June M Gayeta,Vandana Govindan,M.F. Guerrero,Harry Harste,Elmer M Herrera,Jolaade J Ajiboye,P.K. Valdenarro,Marietta L Lagrada,Melissa Ana Masim,Ali Molloy,Geetha Nagaraj,Anderson O Oaikhena,Agnettah M Olorosa,Akshata Prabhu,V. Shammana,M R Shincy,D Sravani,John Stelling,Ben Taylor,Nicole E. Wheeler,A. Schmider,David M. Aanensen +36 more
Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch.
Silvia Argimón,Sophia David,Anthony Underwood,Monica Abrudan,Nicole E. Wheeler,Mihir Kekre,Khalil Abudahab,Corin A. Yeats,Richard Goater,Ben Taylor,Harry Harste,Dawn Muddyman,Edward J. Feil,Sylvain Brisse,Kathryn E. Holt,Kathryn E. Holt,Pilar Donado-Godoy,K L Ravikumar,Iruka N. Okeke,Celia C. Carlos,David M. Aanensen +20 more
TL;DR: Pathogenwatch as mentioned in this paper is a web application for real-time analysis of Klebsiella genomes to aid surveillance at local, national, and global levels, which can identify hospital outbreaks, detect introductions from abroad, and uncover clonal expansions associated with resistance and virulence genes.
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Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch
Silvia Argimon,Sophia David,Anthony Underwood,Monica Abrudan,Nicole E. Wheeler,Mihir Kekre,Khalil Abudahab,Corin A. Yeats,Richard Goater,Ben Taylor,Harry Harste,Dawn Muddyman,Edward J. Feil,Sylvain Brisse,Kathryn E. Holt,Pilar Donado-Godoy,K L Ravikumar,Iruka N. Okeke,Celia C. Carlos,David M. Aanensen +19 more
TL;DR: Pathogenwatch as mentioned in this paper is a free web application for analysis of Klebsiella genomes to aid surveillance at local, national and global levels, which can identify hospital outbreaks, detect introductions from abroad, and uncover clonal expansions associated with resistance and virulence genes.
High-Resolution Genomic Profiling of Carbapenem-Resistant Klebsiella pneumoniae Isolates: A Multicentric Retrospective Indian Study.
Geetha Nagaraj,Varun Shamanna,Vandana Govindan,Steffimole Rose,D Sravani,K P Akshata,M R Shincy,V T Venkatesha,Monica Abrudan,Silvia Argimon,Mihir Kekre,Anthony Underwood,David M. Aanensen,K L Ravikumar,Khalil Abudahab,Harry Harste,Dawn Muddyman,Ben Taylor,Nicole E. Wheeler,Sophia David,Pilar Donado-Godoy,Johan Fabian Bernal,Alejandra Arevalo,Maria Fernanda Valencia,Erik C D Osma Castro,K N Ravishankar,Iruka N. Okeke,Anderson O Oaikhena,Ayorinde O Afolayan,Jolaade J Ajiboye,Erkison Ewomazino Odih,Celia C. Carlos,Marietta L Lagrada,Polle Krystle V Macaranas,Agnettah M Olorosa,June M Gayeta,Elmer M Herrera +36 more
TL;DR: In this article, the authors characterized 344 retrospective K. pneumoniae clinical isolates collected from 8 centers across India collected in 2013-2019 and inferred a single-nucleotide polymorphism phylogeny from their whole genome sequences.
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Genome Sequencing Identifies Previously Unrecognized Klebsiella pneumoniae Outbreaks in Neonatal Intensive Care Units in the Philippines.
Celia C. Carlos,Melissa L Masim,Marietta L Lagrada,June M Gayeta,Polle Krystle V Macaranas,Sonia B. Sia,Maria Adelina M. Facun,Janziel Fiel C. Palarca,Agnettah M Olorosa,Gicell Anne C. Cueno,Monica Abrudan,Khalil Abudahab,Silvia Argimón,Mihir Kekre,Anthony Underwood,John Stelling,David M. Aanensen,Harry Harste,Dawn Muddyman,Ben Taylor,Nicole E. Wheeler,Sophia David,Pilar Donado-Godoy,Johan Fabian Bernal,Alejandra Arevalo,Maria Fernanda Valencia,Erik C D Osma Castro,K L Ravikumar,Geetha Nagaraj,Varun Shamanna,Vandana Govindan,Akshata Prabhu,D Sravani,M R Shincy,Steffimole Rose,K N Ravishankar,Iruka N. Okeke,Anderson O Oaikhena,Ayorinde O Afolayan,Jolaade J Ajiboye,Erkison Ewomazino Odih,Ali Molloy,Carolin Vegvari +42 more
TL;DR: In this article, a retrospective sequencing survey was performed on carbapenem-, extended spectrum beta-lactam-, and cephalosporin-resistant Klebsiella pneumoniae isolated at 20 antimicrobial resistance (AMR) surveillance sentinel sites from 2015 through 2017.