Daniel Wang
California Institute of Technology
6 Papers
192 Citations
Daniel Wang is an academic researcher from California Institute of Technology. The author has contributed to research in topics: WormBase & WormBook. The author has an hindex of 6, co-authored 6 publications. Previous affiliations of Daniel Wang include Washington University in St. Louis.
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Papers
WormBase 2016: expanding to enable helminth genomic research
Kevin L. Howe,Bruce J. Bolt,Scott Cain,Juancarlos Chan,Wen J. Chen,Paul Davis,James Done,Thomas A. Down,Sibyl Gao,Christian A. Grove,Todd W. Harris,Ranjana Kishore,Raymond Lee,Jane Lomax,Yuling Li,Hans-Michael Müller,Cecilia Nakamura,Paulo A. S. Nuin,Michael Paulini,Daniela Raciti,Gary Schindelman,Eleanor J Stanley,Mary Ann Tuli,Kimberly Van Auken,Daniel Wang,Xiaodong Wang,Gary Williams,Adam Wright,Karen Yook,Matthew Berriman,Paul J. Kersey,Tim Schedl,Lincoln Stein,Paul W. Sternberg +33 more
TL;DR: WormBase (www.wormbase.org) is a central repository for research data on the biology, genetics and genomics of Caenorhabditis elegans and other nematodes, and has made a number of improvements to its main website, including new tools for browsing genomic features and ontology annotations.
WormBase 2012: more genomes, more data, new website
Karen Yook,Todd W. Harris,Tamberlyn Bieri,Abigail Cabunoc,Juancarlos Chan,Wen J. Chen,Paul H. Davis,Norie De La Cruz,Adrian Duong,Ruihua Fang,Uma Ganesan,Christian A. Grove,Kevin L. Howe,Snehalata Kadam,Ranjana Kishore,Raymond Lee,Yuling Li,Hans-Michael Müller,Cecilia Nakamura,Bill Nash,Philip Ozersky,Michael Paulini,Daniela Raciti,Arun Rangarajan,Gary Schindelman,Xiaoqi Shi,Erich M. Schwarz,Mary Ann Tuli,Kimberly Van Auken,Daniel Wang,Xiaodong Wang,Gary Williams,Jonathan Hodgkin,Matthew Berriman,Richard Durbin,Paul J. Kersey,John Spieth,Lincoln Stein,Paul W. Sternberg +38 more
TL;DR: This work has automated the identification of key data in the scientific literature and use similar methodology for data extraction to enhance the rate of curation, and introduced a dramatic overhaul of the WormBase website for public beta testing.
WormBase: better software, richer content
Erich M. Schwarz,Igor Antoshechkin,Carol Bastiani,Tamberlyn Bieri,Darin Blasiar,Payan Canaran,Juancarlos Chan,Nansheng Chen,Wen J. Chen,Paul Davis,Tristan J. Fiedler,Lisa-Christine Girard,Todd W. Harris,Eimear E. Kenny,Ranjana Kishore,Daniel Lawson,Raymond Lee,Hans-Michael Müller,Cecilia Nakamura,Phil Ozersky,Andrei Petcherski,Anthony Rogers,William Spooner,Mary Ann Tuli,Kimberly Van Auken,Daniel Wang,Richard Durbin,John Spieth,Lincoln Stein,Paul W. Sternberg +29 more
TL;DR: WormBase (), the public database for genomics and biology of Caenorhabditis elegans, has been restructured for stronger performance and expanded for richer biological content.
WormBase 2014: new views of curated biology
Todd W. Harris,Joachim Baran,Tamberlyn Bieri,Abigail Cabunoc,Juancarlos Chan,Wen J. Chen,Paul H. Davis,James Done,Christian A. Grove,Kevin L. Howe,Ranjana Kishore,Raymond Lee,Yuling Li,Hans-Michael Müller,Cecilia Nakamura,Philip Ozersky,Michael Paulini,Daniela Raciti,Gary Schindelman,Mary Ann Tuli,Kimberly Van Auken,Daniel Wang,Xiaodong Wang,Gary Williams,J. D. Wong,Karen Yook,Tim Schedl,Jonathan Hodgkin,Matthew Berriman,Paul J. Kersey,John Spieth,Lincoln Stein,Paul W. Sternberg +32 more
TL;DR: Efforts to organize the original atomized and highly contextualized curated data into integrated syntheses of discrete biological topics are described.
WormBase: a comprehensive resource for nematode research
Todd W. Harris,Igor Antoshechkin,Tamberlyn Bieri,Darin Blasiar,Juancarlos Chan,Wen J. Chen,Norie De La Cruz,Paul H. Davis,Margaret Duesbury,Ruihua Fang,Jolene Fernandes,Michael Han,Ranjana Kishore,Raymond Lee,Hans-Michael Müller,Cecilia Nakamura,Philip Ozersky,Andrei Petcherski,Arun Rangarajan,Anthony Rogers,Gary Schindelman,Erich M. Schwarz,Mary Ann Tuli,Kimberly Van Auken,Daniel Wang,Xiaodong Wang,Gary Williams,Karen Yook,Richard Durbin,Lincoln Stein,John Spieth,Paul W. Sternberg +31 more
TL;DR: New species and data types now available at WormBase are described and enhancements to the curatorial pipeline and website infrastructure are detail to accommodate new genomes and an extensive user base.