Daniel Kahn
Centre national de la recherche scientifique
110 Papers
1.4K Citations
Daniel Kahn is an academic researcher from Centre national de la recherche scientifique. The author has contributed to research in topics: Biology & Gene. The author has an hindex of 48, co-authored 101 publications. Previous affiliations of Daniel Kahn include École Polytechnique & French Institute for Research in Computer Science and Automation.
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Papers
InterPro: the integrative protein signature database
Sarah Hunter,Rolf Apweiler,Teresa K. Attwood,Amos Marc Bairoch,Alex Bateman,David Binns,Peer Bork,Ujjwal Das,Louise C. Daugherty,Lauranne Duquenne,Robert D. Finn,Julian Gough,Daniel H. Haft,Nicolas Hulo,Daniel Kahn,Elizabeth Kelly,Aurélie Laugraud,Ivica Letunic,David M. Lonsdale,Rodrigo Lopez,Martin Madera,John Maslen,Craig McAnulla,Jennifer McDowall,Jaina Mistry,Alex L. Mitchell,Nicola Mulder,Darren A. Natale,Christine A. Orengo,Antony F. Quinn,Jeremy D. Selengut,Christian J. A. Sigrist,Manjula Thimma,Paul Thomas,Franck Valentin,Derek Wilson,Cathy H. Wu,Corin Yeats +37 more
TL;DR: The InterPro database integrates together predictive models or ‘signatures’ representing protein domains, families and functional sites from multiple, diverse source databases: Gene3D, PANTHER, Pfam, PIRSF, PRINTS, ProDom, PROSITE, SMART, SUPERFAMILY and TIGRFAMs.
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
Olivier Jaillon,Jean-Marc Aury,Frédéric Brunet,Jean-Louis Petit,Nicole Stange-Thomann,Evan Mauceli,Laurence Bouneau,Cécile Fischer,Catherine Ozouf-Costaz,Alain Bernot,Sophie Nicaud,David M. Jaffe,Sheila Fisher,Georges Lutfalla,Carole Dossat,Béatrice Segurens,Corinne Dasilva,Marcel Salanoubat,Michael Levy,Nathalie Boudet,Sergi Castellano,Véronique Anthouard,Claire Jubin,Vanina Castelli,Michael Katinka,Benoit Vacherie,Christian Biémont,Zineb Skalli,Laurence Cattolico,Julie Poulain,Véronique de Berardinis,Corinne Cruaud,Simone Duprat,Philippe Brottier,Jean-Pierre Coutanceau,Jérôme Gouzy,Genís Parra,Guillaume Lardier,Charles Chapple,Kevin McKernan,Paul A. McEwan,Stephanie Bosak,Manolis Kellis,Jean-Nicolas Volff,Roderic Guigó,Michael C. Zody,Jill P. Mesirov,Kerstin Lindblad-Toh,Bruce W. Birren,Chad Nusbaum,Daniel Kahn,Marc Robinson-Rechavi,Vincent Laudet,Vincent Schächter,Francis Quetier,William Saurin,Claude Scarpelli,Patrick Wincker,Eric S. Lander,Eric S. Lander,Jean Weissenbach,Hugues Roest Crollius,Hugues Roest Crollius +62 more
TL;DR: Genome analysis provides a greatly improved fish gene catalogue, including identifying key genes previously thought to be absent in fish, and reconstructs much of the evolutionary history of ancient and recent chromosome rearrangements leading to the modern human karyotype.
The InterPro protein families database: the classification resource after 15 years
Alex L. Mitchell,Hsin-Yu Chang,Louise C. Daugherty,Matthew Fraser,Sarah Hunter,Rodrigo Lopez,Craig McAnulla,Conor McMenamin,Gift Nuka,Sebastien Pesseat,Amaia Sangrador-Vegas,Maxim Scheremetjew,Claudia Rato,Siew-Yit Yong,Alex Bateman,Marco Punta,Teresa K. Attwood,Christian J. A. Sigrist,Nicole Redaschi,Catherine Rivoire,Ioannis Xenarios,Daniel Kahn,Dominique Guyot,Peer Bork,Ivica Letunic,Julian Gough,Matt E. Oates,Daniel H. Haft,Hongzhan Huang,Darren A. Natale,Cathy H. Wu,Christine A. Orengo,Ian Sillitoe,Huaiyu Mi,Paul Thomas,Robert D. Finn +35 more
TL;DR: The new domain architecture search tool is described and the process of mapping of Gene Ontology terms to InterPro is outlined, and the challenges faced by the resource given the explosive growth in sequence data in recent years are discussed.
1.3K
The composite genome of the legume symbiont Sinorhizobium meliloti.
Francis Galibert,Turlough M. Finan,Sharon R. Long,Sharon R. Long,Alfred Pühler,Pia Abola,Frédéric Ampe,Frédérique Barloy-Hubler,Melanie J. Barnett,Anke Becker,P. Boistard,G. Bothe,Marc Boutry,Leah Bowser,Jens Buhrmester,Edouard Cadieu,Delphine Capela,Delphine Capela,Patrick S. G. Chain,Alison Cowie,Ronald W. Davis,Stéphane Dréano,Nancy A. Federspiel,Robert F. Fisher,Stéphanie Gloux,Thérèse Godrie,André Goffeau,Brian Golding,Jérôme Gouzy,Mani Gurjal,Ismael Hernández-Lucas,Andrea Hong,Lucas Huizar,Richard W. Hyman,Ted Jones,Daniel Kahn,Michael L. Kahn,Sue Kalman,David H. Keating,David H. Keating,Ernö Kiss,Caridad Komp,Valerie Lelaure,David Masuy,Curtis J. Palm,Melicent C. Peck,Thomas M. Pohl,Daniel Portetelle,Bénédicte Purnelle,Uwe Ramsperger,Raymond Surzycki,Patricia Thebault,Micheline Vandenbol,Frank-J. Vorhölter,Stefan Weidner,Derek H. Wells,Kim Wong,Kuo-Chen Yeh,Kuo-Chen Yeh,Jacques Batut +59 more
TL;DR: The annotated DNA sequence of the α-proteobacteriumSinorhizobium meliloti, the symbiont of alfalfa, is presented, indicating that all three elements contribute, in varying degrees, to symbiosis and reveals how this genome may have emerged during evolution.
1.2K
Genetic regulation of biological nitrogen fixation
Ray Dixon,Daniel Kahn +1 more
TL;DR: The ability of microorganisms to use nitrogen gas as the sole nitrogen source and engage in symbioses with host plants confers many ecological advantages, but also incurs physiological penalties because the process is oxygen sensitive and energy dependent.
1.1K