Cathrin Herder
Karlsruhe Institute of Technology
6 Papers
4 Citations
Cathrin Herder is an academic researcher from Karlsruhe Institute of Technology. The author has contributed to research in topics: Biology & Population. The author has an hindex of 2, co-authored 3 publications.
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Papers
Genomic variations and epigenomic landscape of the Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel
Adrien Leger,Ian Brettell,Jack M. Monahan,Carl Barton,Nadeshda Wolf,N. Kusminski,Cathrin Herder,Narendar Aadepu,Clara Becker,Jakob Gierten,Omar T. Hammouda,Eva Hasel,Colin Q. Lischik,Katharina Lust,N. Ya. Sokolova,Risa Suzuki,Tinatini Tavhelidse,Thomas Thumberger,Erika Tsingos,Philip Watson,Bettina Welz,Kiyoshi Naruse,Felix Loosli,Joachim Wittbrodt,Ewan Birney,Tomas W Fitzgerald +25 more
TL;DR: In this paper , a pan-genome graph representation of 12 individual teleost medaka lines was used to investigate the genomic and epigenomic landscapes of a subset of the MIKK panel.
The Medaka Inbred Kiyosu-Karlsruhe (MIKK) Panel
Tomas W Fitzgerald,Ian Brettell,Adrien Leger,Nadeshda Wolf,Natalja Kusminski,Jack M. Monahan,Carl Barton,Cathrin Herder,Narendar Aadepu,Narendar Aadepu,Jakob Gierten,Clara Becker,Omar T. Hammouda,Eva Hasel,Colin Q. Lischik,Katharina Lust,Erika Tsingos,Tinatini Tavhelidse,Thomas Thumberger,Bettina Welz,Nadia Khouja,Kiyoshi Naruse,Ewan Birney,Joachim Wittbrodt,Felix Loosli +24 more
TL;DR: The Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel is presented: the first near-isogenic panel of 80 inbred lines in a vertebrate model derived from a wild founder population to allow robust genotype-to-phenotype investigations.
Genomic variations and epigenomic landscape of the Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel
Adrien Leger,Brettell I,Jack M. Monahan,Carl Barton,Wolf N,Kusminski N,Cathrin Herder,Narendar Aadepu,Narendar Aadepu,Clara Becker,Jakob Gierten,Omar T. Hammouda,Eva Hasel,Colin Q. Lischik,Katharina Lust,Suzuki R,Tinatini Tavhelidse,Thomas Thumberger,Erika Tsingos,Watson P,Bettina Welz,Kiyoshi Naruse,Felix Loosli,Jochen Wittbrodt,Ewan Birney,Tomas W Fitzgerald +25 more
TL;DR: In this article, the authors used Oxford Nanopore Technologies (ONT) long read data to further investigate the genomic and epigenomic landscapes of a subset of the MIKK panel.
Conserved and diverged asymmetric gene expression in the brain of teleosts
Carolina Agostini,Anja Bühler,Alessandra Antico Calderone,Narendar Aadepu,Cathrin Herder,Felix Loosli,Matthias Carl +6 more
TL;DR: Analysis of diverged medaka inbred strains reveals both inter-species differences but also intra-species plasticity of gene expression in the teleost dorsal diencephalon, showing the potential to identify the genetics underlying the emergence and modulations of asymmetries.
ArhGEF18 regulates RhoA-Rock2 signaling to maintain neuro-epithelial apico-basal polarity and proliferation
Cathrin Herder,Jakub M. Swiercz,Claudia Müller,Ravindra Peravali,Rebecca Quiring,Stefan Offermanns,Joachim Wittbrodt,Joachim Wittbrodt,Felix Loosli +8 more
TL;DR: It is shown that ArhGEF18-mediated activation of the small GTPase RhoA is required to maintain apicobasal polarity at the onset of retinal differentiation and to control the ratio of neurogenic to proliferative cell divisions.