[신간의 별자리x] 우리/미술, 그리고 ‘슬픔의 박물관’

Transformers have dominated the field of natural language processing and have recently made an impact in the area of computer vision. In the field of medical image analysis, transformers have also been successfully used in to full-stack clinical applications, including image synthesis/reconstruction, registration, segmentation, detection, and diagnosis. This paper aims to promote awareness of the applications of transformers in medical image analysis. Specifically, we first provide an overview of the core concepts of the attention mechanism built into transformers and other basic components. Second, we review various transformer architectures tailored for medical image applications and discuss their limitations. Within this review, we investigate key challenges including the use of transformers in different learning paradigms, improving model efficiency, and coupling with other techniques. We hope this review will provide a comprehensive picture of transformers to readers with an interest in medical image analysis. 

Transformers in Medical Image Analysis: A Review

Transformer, an attention-based encoder-decoder model, has already revolutionized the field of natural language processing (NLP). Inspired by such significant achievements, some pioneering works have recently been done on employing Transformer-liked architectures in the computer vision (CV) field, which have demonstrated their effectiveness on three fundamental CV tasks (classification, detection, and segmentation) as well as multiple sensory data stream (images, point clouds, and vision-language data). Because of their competitive modeling capabilities, the visual Transformers have achieved impressive performance improvements over multiple benchmarks as compared with modern convolution neural networks (CNNs). In this survey, we have reviewed over 100 of different visual Transformers comprehensively according to three fundamental CV tasks and different data stream types, where taxonomy is proposed to organize the representative methods according to their motivations, structures, and application scenarios. Because of their differences on training settings and dedicated vision tasks, we have also evaluated and compared all these existing visual Transformers under different configurations. Furthermore, we have revealed a series of essential but unexploited aspects that may empower such visual Transformers to stand out from numerous architectures, e.g., slack high-level semantic embeddings to bridge the gap between the visual Transformers and the sequential ones. Finally, two promising research directions are suggested for future investment. We will continue to update the latest articles and their released source codes at. 

A Survey of Visual Transformers

Automatic diabetic retinopathy (DR) lesions segmentation makes great sense of assisting ophthalmologists in diagnosis. Although many researches have been conducted on this task, most prior works paid too much attention to the designs of networks instead of considering the pathological association for lesions. Through investigating the pathogenic causes of DR lesions in advance, we found that certain lesions are closed to specific vessels and present relative patterns to each other. Motivated by the observation, we propose a relation transformer block (RTB) to incorporate attention mechanisms at two main levels: a self-attention transformer exploits global dependencies among lesion features, while a cross-attention transformer allows interactions between lesion and vessel features by integrating valuable vascular information to alleviate ambiguity in lesion detection caused by complex fundus structures. In addition, to capture the small lesion patterns first, we propose a global transformer block (GTB) which preserves detailed information in deep network. By integrating the above blocks of dual-branches, our network segments the four kinds of lesions simultaneously. Comprehensive experiments on IDRiD and DDR datasets well demonstrate the superiority of our approach, which achieves competitive performance compared to state-of-the-arts. 

/pdf/rtnet-relation-transformer-network-for-diabetic-retinopathy-3ig374sc.pdf

RTNet: Relation Transformer Network for Diabetic Retinopathy Multi-Lesion Segmentation

Automatic diabetic retinopathy (DR) lesions segmentation makes great sense of assisting ophthalmologists in diagnosis. Although many researches have been conducted on this task, most prior works paid too much attention to the designs of networks instead of considering the pathological association for lesions. Through investigating the pathogenic causes of DR lesions in advance, we found that certain lesions are closed to specific vessels and present relative patterns to each other. Motivated by the observation, we propose a relation transformer block (RTB) to incorporate attention mechanisms at two main levels: a self-attention transformer exploits global dependencies among lesion features, while a cross-attention transformer allows interactions between lesion and vessel features by integrating valuable vascular information to alleviate ambiguity in lesion detection caused by complex fundus structures. In addition, to capture the small lesion patterns first, we propose a global transformer block (GTB) which preserves detailed information in deep network. By integrating the above blocks of dual-branches, our network segments the four kinds of lesions simultaneously. Comprehensive experiments on IDRiD and DDR datasets well demonstrate the superiority of our approach, which achieves competitive performance compared to state-of-the-arts.

Glaucoma is the leading reason for irreversible blindness. Early detection and timely treatment of glaucoma are essential for preventing visual field loss or even blindness. In clinical practice, Optical Coherence Tomography (OCT) and Visual Field (VF) exams are two widely-used and complementary techniques for diagnosing glaucoma. OCT provides quantitative measurements of the optic nerve head (ONH) structure, while VF test is the functional assessment of peripheral vision. In this paper, we propose a Deep Relation Transformer (DRT) to perform glaucoma diagnosis with OCT and VF information combined. A novel deep reasoning mechanism is proposed to explore implicit pairwise relations between OCT and VF information in global and regional manners. With the pairwise relations, a carefully-designed deep transformer mechanism is developed to enhance the representation with complementary information for each modal. Based on reasoning and transformer mechanisms, three successive modules are designed to extract and collect valuable information for glaucoma diagnosis, the global relation module, the guided regional relation module, and the interaction transformer module, namely. Moreover, we build a large dataset, namely ZOC-OCT&VF dataset, which includes 1395 OCT-VF pairs for developing and evaluating our DRT. We conduct extensive experiments to validate the effectiveness of the proposed method. Experimental results show that our method achieves 88.3% accuracy and outperforms the existing single-modal approaches with a large margin. The codes and dataset will be publicly available in the future.

Deep Relation Transformer for Diagnosing Glaucoma With Optical Coherence Tomography and Visual Field Function

Scene text detection for equipment nameplates in the wild is important for equipment inspection robot since it enables inspection robot to take specific actions for different equipment’s. Although text detection in images has achieved great progress in recent years, the detection for equipment nameplates faces several challenges such as extreme illumination and distortion which significantly decrease the detection performance. In this paper, we propose a deep text detection model Robust Text Line Detection (RTLD) for locating word level text instances in equipment cards. Specifically, the proposed model first employs a corner detection module to determine the four corner points of each nameplate, and then a carefully designed image transformed module transforms the irregular nameplate region into a rectangular region. Finally, text detection module is introduced to locate every word level text instance in the transformed images. We conduct extensive experiments to examine our proposed methods on real equipment nameplate images. Our model achieves 91 . 2% precision and 92 . 6% recall on Equipment Nameplate Dataset. The experimental results demonstrate the effectiveness of our models.

Robust Text Line Detection in Equipment Nameplate Images

Sampling is a basic operation of modern convolutional neural networks (CNN) since down-sampling operators are employed to enlarge the receptive field while up-sampling operators are adopted to increase resolution. Most existing deep segmentation networks employ regular grid sampling operators, which can be suboptimal for semantic segmentation task due to large shape and scale variance. To address this problem, this paper proposes a Context Guided Dynamic Sampling (CGDS) module to obtain an effective representation with rich shape and scale information by adaptively sampling useful segmentation information in spatial space. Moreover, we utilize the multi-scale contextual representations to guide the sampling process. Therefore, our CGDS can adaptively capture shape and scale information according to not only the input feature map but also the multi-scale semantic context. CGDS provides a plug-and-play module which can be easily incorporated in deep segmentation networks. We incorporate our proposed CGDS module into Dynamic Sampling Network (DSNet) and perform extensive experiments on segmentation datasets. Experimental results show that our CGDS significantly improves semantic segmentation performance and achieves state-of-the-art performance on PASCAL VOC 2012 and ADE20K datasets. Our model achieves 85.2% mIOU on PASCAL VOC 2012 test set without MS COCO dataset pre-trained and 46.4% on ADE20K validation set. The codes will become publicly available after publication.

/pdf/dynamic-sampling-network-for-semantic-segmentation-2f396c0nv2.pdf

Dynamic Sampling Network for Semantic Segmentation

Automatic artistic text generation is an emerging topic which receives increasing attention due to its wide applications. The artistic text can be divided into three components, content, font, and texture, respectively. Existing artistic text generation models usually focus on manipulating one aspect of the above components, which is a sub-optimal solution for controllable general artistic text generation. To remedy this issue, we propose a novel approach, namely GenText, to achieve general artistic text style transfer by separably migrating the font and texture styles from the different source images to the target images in an unsupervised manner. Specifically, our current work incorporates three different stages, stylization, destylization, and font transfer, respectively, into a unified platform with a single powerful encoder network and two separate style generator networks, one for font transfer, the other for stylization and destylization. The destylization stage first extracts the font style of the font reference image, then the font transfer stage generates the target content with the desired font style. Finally, the stylization stage renders the resulted font image with respect to the texture style in the reference image. Moreover, considering the difficult data acquisition of paired artistic text images, our model is designed under the unsupervised setting, where all stages can be effectively optimized from unpaired data. Qualitative and quantitative results are performed on artistic text benchmarks, which demonstrate the superior performance of our proposed model. The code with models will become publicly available in the future.

GenText: Unsupervised Artistic Text Generation via Decoupled Font and Texture Manipulation

In recent years, scene text recognition has achieved significant improvement and various state-of-the-art recognition approaches have been proposed. This paper focused on recognizing text in natural photos of equipment nameplates, which has wide applications in industrial automations. This task only receives little attentions in previous works. The challenge of this problem comes from multi-orientation, curved, noisy and blurry text patches in equipment nameplates. To address this problem, we propose a deep model for text recognition in multi-oriented nameplates, namely, Orientation Robust Scene Text Recognition (ORSTR). Specifically, our model employs a rectification module to transform curved, distorted or multi-orientation text to near-horizontal text with a carefully designed rectification module. Once the near-horizontal text has been generated, recognition network will output the predictions of text patches. Our scene text recognition model achieves 90 . 8% recognition accuracy on equipment nameplate dataset which outperforms previous scene text recognition model (CRNN) about 0 . 8%. Several extensive experiments have been conducted to verify the effectiveness of our model.

Orientation Robust Scene Text Recognition in Natural Scene

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