Bernard Haggarty
Western General Hospital
4 Papers
Bernard Haggarty is an academic researcher from Western General Hospital. The author has contributed to research in topics: The Internet & Biological data. The author has an hindex of 4, co-authored 4 publications.
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Papers
The BioMart community portal: an innovative alternative to large, centralized data repositories
Damian Smedley,Syed Haider,Steffen Durinck,Luca Pandini,Paolo Provero,Paolo Provero,James E. Allen,Olivier Arnaiz,Mohammad Awedh,Richard Baldock,Giulia Barbiera,Philippe Bardou,Tim Beck,Andrew Blake,Merideth Bonierbale,Anthony J. Brookes,Gabriele Bucci,Iwan Buetti,Sarah W. Burge,Cédric Cabau,Joseph W. Carlson,Claude Chelala,Charalambos Chrysostomou,Davide Cittaro,Olivier Collin,Raul Cordova,Rosalind J. Cutts,Erik Dassi,Alex Di Genova,Anis Djari,Anthony Esposito,Heather Estrella,Eduardo Eyras,Eduardo Eyras,Julio Fernandez-Banet,Simon A. Forbes,Robert C. Free,Takatomo Fujisawa,Emanuela Gadaleta,Jose Manuel Garcia-Manteiga,David Goodstein,Kristian Gray,José Afonso Guerra-Assunção,Bernard Haggarty,Dong Jin Han,Byung Woo Han,Todd W. Harris,Jayson Harshbarger,Robert K. Hastings,Richard D. Hayes,Claire Hoede,Shen Hu,Zhi-Liang Hu,Lucie N. Hutchins,Zhengyan Kan,Hideya Kawaji,Aminah Keliet,Arnaud Kerhornou,Sunghoon Kim,Rhoda Kinsella,Christophe Klopp,Lei Kong,Daniel Lawson,Dejan Lazarevic,Ji Hyun Lee,Thomas Letellier,Chuan-Yun Li,Pietro Liò,Chu Jun Liu,Jie Luo,Alejandro Maass,Jérôme Mariette,Thomas Maurel,Stefania Merella,Azza M. Mohamed,François Moreews,Ibounyamine Nabihoudine,Nelson Ndegwa,Céline Noirot,Cristian Perez-Llamas,Michael Primig,Alessandro Quattrone,Hadi Quesneville,Davide Rambaldi,James M. Reecy,Michela Riba,Steven Rosanoff,Amna A. Saddiq,Elisa Salas,Olivier Sallou,Rebecca Shepherd,Reinhard Simon,Linda Sperling,William Spooner,Daniel M. Staines,Delphine Steinbach,Kevin R. Stone,Elia Stupka,Jon W. Teague,Abu Z. Dayem Ullah,Jun Wang,Doreen Ware,Marie Wong-Erasmus,Ken Youens-Clark,Amonida Zadissa,Shi Jian Zhang,Arek Kasprzyk,Arek Kasprzyk +107 more
TL;DR: The latest version of the BioMart Community Portal comes with many new databases that have been created by the ever-growing community and comes with better support and extensibility for data analysis and visualization tools.
The GUDMAP database – an online resource for genitourinary research
Simon D. Harding,Chris Armit,Jane F. Armstrong,Jane Brennan,Ying Cheng,Bernard Haggarty,Derek Houghton,Sue Lloyd-MacGilp,Xingjun Pi,Yogmatee Roochun,Mehran Sharghi,Christopher Tindal,Andrew P. McMahon,Brian Gottesman,Melissa H. Little,Kylie Georgas,Bruce J. Aronow,S. Steven Potter,Eric W. Brunskill,E. Michelle Southard-Smith,Cathy Mendelsohn,Richard Baldock,Jamie A. Davies,Duncan Davidson +23 more
TL;DR: Examples of how the GUDMAP data have been used to address problems in developmental biology are given and a primer for those wishing to use the database in their own research is provided.
Access and use of the GUDMAP database of genitourinary development.
Jamie A. Davies,Melissa H. Little,Bruce J. Aronow,Jane F. Armstrong,Jane Brennan,Sue Lloyd-MacGilp,Chris Armit,Simon D. Harding,Xinjun Piu,Yogmatee Roochun,Bernard Haggarty,Derek Houghton,Duncan Davidson,Richard Baldock +13 more
TL;DR: The Genitourinary Development Molecular Atlas Project (GUDMAP) aims to document gene expression across time and space in the developing urogenital system of the mouse, and to provide access to a variety of relevant practical and educational resources.
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BioMart Central Portal: an open database network for the biological community
Jonathan M. Guberman,J. Ai,Olivier Arnaiz,Joachim Baran,Andrew Blake,Richard Baldock,Claude Chelala,David Croft,Anthony Cros,Rosalind J. Cutts,A. Di Génova,Simon A. Forbes,Takatomo Fujisawa,Emanuela Gadaleta,David Goodstein,David Goodstein,Gunes Gundem,Bernard Haggarty,Syed Haider,Matthew Hall,Todd W. Harris,Robin Haw,Shen Hu,Simon J. Hubbard,Jack Hsu,Vivek Iyer,Philip Jones,Toshiaki Katayama,Rhoda Kinsella,Lei Kong,Daniel Lawson,Yong Liang,Nuria Lopez-Bigas,Jie Luo,Michael Lush,Jeremy Mason,François Moreews,Nelson Ndegwa,Darren J. Oakley,Christian Perez-Llamas,Michael Primig,Elena Rivkin,S. Rosanoff,Rebecca Shepherd,Reinhard Simon,B. Skarnes,Damian Smedley,Linda Sperling,William Spooner,Peter Stevenson,Kevin R. Stone,Jon W. Teague,Jun Wang,Jianxin Wang,Brett R Whitty,D. T. Wong,Marie Wong-Erasmus,L. Yao,Ken Youens-Clark,Christina K. Yung,Junjun Zhang,Arek Kasprzyk +61 more
TL;DR: The structure of Central Portal is described and example queries are shown to demonstrate its capabilities, with a wide variety of databases, an easy-to-use interface, robust programmatic access and the array of tools make Central Portal a one-stop shop for biological data querying.