Allelopathy for weed control in agricultural systems

Purine catabolism is regarded as a housekeeping function that remobilizes nitrogen for plant growth and development. However, emerging evidence suggests that certain purine metabolites might contribute to stress protection of plants. Here, we show that in Arabidopsis, the intermediary metabolite allantoin plays a role in abiotic stress tolerance via activation of abscisic acid (ABA) metabolism. The aln loss-of-function of ALN, encoding allantoinase, results in increased allantoin accumulation, genome-wide up-regulation of stress-related genes and enhanced tolerance to drought-shock and osmotic stress in aln mutant seedlings. This phenotype is not caused by a general response to purine catabolism inhibition, but rather results from a specific effect of allantoin. Allantoin activates ABA production both through increased transcription of NCED3, encoding a key enzyme in ABA biosynthesis, and through post-translational activation via high-molecular-weight complex formation of BG1, a β-glucosidase hydrolysing glucose-conjugated ABA. Exogenous application of allantoin to wild-type plants also activates the two ABA-producing pathways that lead to ABA accumulation and stress-responsive gene expression, but this effect is abrogated in ABA-deficient and BG1-knockout mutants. We propose that purine catabolism functions not only in nitrogen metabolism, but also in stress tolerance by influencing ABA production, which is mediated by the possible regulatory action of allantoin.

https://onlinelibrary.wiley.com/doi/pdf/10.1111/pce.12218

The purine metabolite allantoin enhances abiotic stress tolerance through synergistic activation of abscisic acid metabolism

Water and nitrogen availability limit crop productivity globally more than most other environmental factors. Plant availability of macronutrients such as nitrate is, to a large extent, regulated by the amount of water available in the soil, and, during drought episodes, crops can become simultaneously water and nitrogen limited. In this review, we explore the intricate relationship between water and nitrogen transport in plants, from transpiration-driven mass flow in the soil to uptake by roots via membrane transporters and channels and transport to aerial organs. We discuss the roles of root architecture and of suberized hydrophobic root barriers governing apoplastic water and nitrogen movement into the vascular system. We also highlight the need to identify the signalling cascades regulating water and nitrogen transport, as well as the need for targeted physiological analyses of plant traits influencing water and nitrogen uptake. We further advocate for incorporation of new phenotyping technologies, breeding strategies, and agronomic practices to improve crop yield in water- and nitrogen-limited production systems.

/pdf/the-intersection-of-nitrogen-nutrition-and-water-use-in-xlihoebdzr.pdf

The intersection of nitrogen nutrition and water use in plants: new paths toward improved crop productivity.

Plant-to-plant signalling is a key mediator of interactions among plant species. Plants can perceive and respond to chemical cues emitted from their neighbours, altering survival and performance, impacting plant coexistence and community assembly. An increasing number of studies indicate root exudates as key players in plant-to-plant signalling. Root exudates mediate root detection and behaviour, kin recognition, flowering and production, driving inter- and intra-specific facilitation in cropping systems and mixed-species plantations. Altered interactions may be attributed to the signalling components within root exudates. Root ethylene, strigolactones, jasmonic acid, (-)-loliolide and allantoin are signalling chemicals that convey information on local conditions in plant-plant interactions. These root-secreted signalling chemicals appear ubiquitous in plants and trigger a series of belowground responses inter- and intra-specifically, involving molecular events in biosynthesis, secretion and action. The secretion of root signals, mainly mediated by ATP-binding cassette transporters, is critical. Root-secreted signalling chemicals and their molecular mechanisms are rapidly revealing a multitude of fascinating plant-plant interactions. However, many root signals, particularly species-specific signals and their underlying mechanisms, remain to be uncovered due to methodological limitations and root-soil interactions. A thorough understanding of root-secreted chemical signals and their mechanisms will offer many ecological implications and potential applications for sustainable agriculture.

Root exudate signals in plant–plant interactions

While the importance of cell type specificity in plant adaptive responses is widely accepted, only a limited number of studies have addressed this issue at the functional level. We have combined electrophysiological, imaging, and biochemical techniques to reveal the physiological mechanisms conferring higher sensitivity of apical root cells to salinity in barley (Hordeum vulgare). We show that salinity application to the root apex arrests root growth in a highly tissue- and treatment-specific manner. Although salinity-induced transient net Na+ uptake was about 4-fold higher in the root apex compared with the mature zone, mature root cells accumulated more cytosolic and vacuolar Na+, suggesting that the higher sensitivity of apical cells to salt is not related to either enhanced Na+ exclusion or sequestration inside the root. Rather, the above differential sensitivity between the two zones originates from a 10-fold difference in K+ efflux between the mature zone and the apical region (much poorer in the root apex) of the root. Major factors contributing to this poor K+ retention ability are (1) an intrinsically lower H+-ATPase activity in the root apex, (2) greater salt-induced membrane depolarization, and (3) a higher reactive oxygen species production under NaCl and a larger density of reactive oxygen species-activated cation currents in the apex. Salinity treatment increased (2- to 5-fold) the content of 10 (out of 25 detected) amino acids in the root apex but not in the mature zone and changed the organic acid and sugar contents. The causal link between the observed changes in the root metabolic profile and the regulation of transporter activity is discussed.

Cell-Type-Specific H+-ATPase Activity in Root Tissues Enables K+ Retention and Mediates Acclimation of Barley (Hordeum vulgare) to Salinity Stress

Effects of reduced chlorophyll content on photosystem functions and photosynthetic electron transport rate in rice leaves.

Despite increasing knowledge of allantoin as a phytochemical involved in rice, relatively little is known about its distribution and function in rice grains. In this study, allantoin was quantified in 15 Chinese rice grains, and its contents varied with grain fraction, cultivar, and genotype. Bran always had the highest allantoin level, followed by brown rice and milled rice. Hull contained the lowest allantoin content. Allantoin in japonica bran ranged from 70 to 171 μg/g but rarely exceeded 100 μg/g in indica bran. There was a positive relationship between allantoin level in grains and seedling survival in seedbeds under low temperature or water deficit. Exogenous allantoin stimulated plant growth, increased soluble sugar and free proline contents, and decreased malondialdehyde content in rice seedlings. However, allantoin did not show any antioxidant activity through free radical-scavenging capacity, reducing power, linoleic acid peroxidation inhibition, and chelating activity. The results suggest that allantoin in rice grains may play some roles in providing plant stress protection but not serving as a beneficial health antioxidant.

Distribution and function of allantoin (5-ureidohydantoin) in rice grains.

The production of secondary metabolites and biomass of plants may be altered by coexistence and competition. Rice has coexisted with barnyardgrass in paddy systems for centuries and represents a model system for understanding plant–plant interactions. Despite increasing knowledge of allelochemicals produced and released by rice involved in coexistence of these two species, relatively little is known about the role and production of beneficial chemicals of rice in response to competing barnyardgrass. The purpose of this study was to quantify the growth-stimulating allantoin (5-ureidohydantoin) and its effect on barnyardgrass growth in a rice–barnyardgrass system. In this system, rice produced and released allantoin but barnyardgrass did not. The production of allantoin by rice responded to competition from barnyardgrass, and its concentration varied among rice cultivars tested. At 1:1 barnyardgrass and rice mixture proportion, allantoin concentration in allelopathic cultivars was obviously lowered by competing barnyardgrass, while no significant variation of allantoin concentration was observed in non-allelopathic cultivars. Barnyardgrass biomass was reduced in mixed-culture with rice cultivars, in particular, allelopathic cultivars. There was a positive relationship between allantoin concentration in rice cultivars and barnyardgrass biomass. Furthermore, allantoin stimulated the growth of barnyardgrass once released from rice or added to soil. The results suggest that rice plants of allelopathic cultivars appear to be able to detect the presence of competing barnyardgrass and respond by decreasing production of growth-stimulating allantoin, regulating the growth of barnyardgrass. In this manner, given rice cultivars may alleviate the competition of barnyardgrass and provide greater benefit to their own growth.

Response and relation of allantoin production in different rice cultivars to competing barnyardgrass

Despite increasing knowledge of the interference of allelopathic rice with barnyardgrass mediated by allelochemicals, the interference mechanisms are still being elucidated. Here we test whether the interference of allelopathic rice with barnyardgrass may be interpreted from the perspective of plant-soil feedback. We grew barnyardgrass in the soil previously grown with allelopathic rice at the seedling and mature stages in relation to monoculture and mixed-culture and examined the performance of barnyardgrass. We quantified soil allelochemicals and analyzed soil nutrients and microbial communities. Barnyardgrass biomass in soil trained by allelopathic rice PI312777 seedlings was reduced significantly when compared with non-allelopathic rice Liaojing-9 and barnyardgrass seedlings. The performance differences were strengthened by mixed-culture with allelopathic rice seedlings or when incubated with their root exudates and trained soils. In contrast, increased biomass of barnyardgrass in the allelopathic rice soil was observed at the mature stage. At the seedling stage, allelochemical concentrations were much higher in the allelopathic than in the non-allelopathic rice soils. At the mature stage, however, allelochemicals were not detected in the soils. Soil nutrients and phospholipid fatty acids profiles showed that negative feedback at the seedling stage was independent of allelochemicals and microbial communities while positive feedback at the mature stage was more related to nutrients than to allelochemicals and microbial communities. Plant-soil feedback contributes to the interference of allelopathic rice with barnyardgrass, and allelochemical context alters plant-soil feedback at different growth stages.

Plant-soil feedback in the interference of allelopathic rice with barnyardgrass

Rice (Oryza sativa L.) may release allantoin into paddy soil. Currently, little attention has been paid to the effects of allantoin on soil microbial diversity and community. In this study, the diversity indices for the microbial community in rice soil and the allantoin-induced shifts in the microbial community composition across moisture regimes versus incubation times were examined by looking at phospholipid fatty acid (PLFA) profiles and PCR-denaturing gradient gel electrophoresis (DGGE) patterns. The total PLFA concentration increased with the amount of allantoin applied during incubation. A similar trend occurred for microbial biomass carbon (MBC) and pH. Furthermore, applying allantoin resulted in an increased ratio of anaerobe: aerobe and bacteria: fungi but decreased the ratio of Gram-negative bacteria: Gram-positive bacteria (GN: GP) and fungal marker 18:2ω6,9c under flooded rice soil. A stepwise discriminant analysis of the PLFA pattern clearly separated allantoin-treated samples from non-treated samples. There was also a clear split between different incubation times. Moisture treatments differed in the ratios of anaerobe: aerobe and GN: GP but showed similar trends in total PLFA concentrations and the bacteria: fungi ratio during incubation. These results suggest that application of allantoin stimulates shifts in microbial community composition and increases microbial diversity as well as living microbial biomass in rice soil.

Allantoin-induced changes of microbial diversity and community in rice soil

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